Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   PI20285_RS04590 Genome accession   NZ_CP019981
Coordinates   909135..910403 (-) Length   422 a.a.
NCBI ID   WP_057772037.1    Uniprot ID   -
Organism   Pediococcus inopinatus strain DSM 20285     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 904135..915403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PI20285_RS04585 (PI20285_04570) - 907398..909113 (-) 1716 WP_057772039.1 proline--tRNA ligase -
  PI20285_RS04590 (PI20285_04575) eeP 909135..910403 (-) 1269 WP_057772037.1 RIP metalloprotease RseP Regulator
  PI20285_RS04595 (PI20285_04580) - 910421..911206 (-) 786 WP_057772035.1 phosphatidate cytidylyltransferase -
  PI20285_RS04600 (PI20285_04585) - 911220..912014 (-) 795 WP_082623217.1 isoprenyl transferase -
  PI20285_RS04605 (PI20285_04590) frr 912181..912744 (-) 564 WP_057772033.1 ribosome recycling factor -
  PI20285_RS04610 (PI20285_04595) pyrH 912746..913468 (-) 723 WP_057772032.1 UMP kinase -
  PI20285_RS04615 (PI20285_04600) tsf 913795..914673 (-) 879 WP_057772030.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46458.15 Da        Isoelectric Point: 9.3988

>NTDB_id=219531 PI20285_RS04590 WP_057772037.1 909135..910403(-) (eeP) [Pediococcus inopinatus strain DSM 20285]
MIQTIITFIIVFGILVIVHEFGHFYFAKKSGILVREFSIGMGPKIYAYSKNATTYTIRILPVGGYVRMAGLEDADEELKP
GMPVSLITGDNGKVETINTSHDTTLLNGIPVEITESDLEKELWIEGYENGDEETLKRYEVDHDASIIEADGTKVRIAPKD
VQFQSAKLWQRILTNFAGPMNNFILAIVVFALVGILQGQVPTNSNQITVIQDSVAAKAGLKSQDRIISVNDKSTKDWSDL
QDAVSSRPGKKTKMTIKRNSKKITLQITPKSVKQNGTKTGQIGIESTMTKSITARIAYGFTETWKLTTMIFALLGHMITH
GVSVNDFGGPVAIYAQTSAAAKLGFTSVLTMLAYLSLNLGIVNLIPIPALDGGKILLNFIEGIRRKPLKPETEGIITLIG
FGLLMLLMILVTWNDIQRYFLK

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=219531 PI20285_RS04590 WP_057772037.1 909135..910403(-) (eeP) [Pediococcus inopinatus strain DSM 20285]
TTGATACAGACGATTATTACATTCATAATTGTATTTGGAATTCTGGTTATTGTTCATGAATTTGGTCATTTTTATTTTGC
TAAAAAATCTGGGATCTTAGTCCGTGAATTTTCAATCGGAATGGGACCTAAAATTTATGCATATTCTAAAAACGCAACAA
CGTATACAATTCGAATTTTGCCGGTAGGTGGTTATGTCCGTATGGCGGGACTGGAAGATGCAGATGAAGAATTAAAACCT
GGAATGCCAGTCAGTTTAATCACTGGTGATAATGGCAAAGTTGAAACAATCAACACAAGTCATGACACAACGCTTCTCAA
TGGTATTCCAGTTGAAATAACCGAAAGTGATTTAGAAAAGGAGCTTTGGATTGAAGGCTATGAAAATGGCGATGAGGAGA
CCCTCAAACGTTATGAAGTTGATCATGACGCGTCAATTATTGAAGCTGATGGCACAAAGGTAAGAATTGCCCCAAAAGAT
GTTCAATTTCAGTCAGCCAAATTATGGCAACGAATTTTGACTAATTTTGCAGGGCCGATGAATAATTTTATTCTGGCGAT
TGTGGTGTTTGCGCTTGTTGGTATTTTGCAAGGACAGGTTCCTACTAATTCTAATCAGATTACTGTTATTCAGGATTCCG
TTGCTGCTAAAGCCGGTTTAAAATCGCAGGATCGGATTATTTCCGTGAATGATAAAAGCACAAAAGATTGGTCAGATTTA
CAGGATGCTGTTTCTAGCCGTCCTGGTAAAAAAACTAAAATGACCATCAAACGAAATTCTAAGAAAATCACTCTGCAGAT
TACGCCCAAATCGGTTAAGCAAAATGGAACAAAGACCGGACAAATCGGGATTGAAAGTACCATGACCAAAAGTATCACTG
CCAGAATTGCTTATGGATTTACGGAAACCTGGAAGTTAACGACCATGATTTTCGCACTCCTAGGTCATATGATTACACAT
GGAGTAAGTGTGAATGATTTTGGAGGTCCAGTCGCTATTTATGCGCAAACTTCTGCTGCAGCTAAATTAGGTTTTACTTC
TGTGTTAACAATGTTAGCTTATTTATCACTGAACTTAGGGATTGTTAATTTAATCCCAATTCCCGCGTTGGATGGTGGTA
AAATTTTGCTTAATTTCATCGAAGGGATCAGACGAAAACCACTAAAACCAGAGACGGAAGGAATCATCACTCTGATTGGG
TTTGGACTCCTGATGCTTTTAATGATTCTTGTAACTTGGAATGACATTCAACGCTATTTCTTAAAATAA

Domains

Predicted by InterproScan.

Peptidase family M50 (Peptidase_M50)

(7-407)

PDZ domain (PDZ_6)

(208-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

47.664

100

0.483
  eeP Streptococcus thermophilus LMD-9

47.43

100

0.481

Multiple sequence alignment