Detailed information NTG0219362

Bioinformatically predicted

Overview

• Name: ctsF
• Type: Machinery gene
• Locus tag: B4W62_RS01590
• Genome accession: NZ_CP019977
• Coordinates: 317359..318534 (+)
• Length: 391 a.a.
• NCBI ID: WP_002781160.1
• Uniprot ID: A0A0Q2ISE7
• Organism: Campylobacter coli strain aerotolerant OR12
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 312359..323534

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B4W62_RS01565	ctsR	312928..313239 (+)	312	WP_002822983.1	hypothetical protein	Machinery gene
B4W62_RS01570	ctsD	313217..314635 (+)	1419	WP_002779315.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
B4W62_RS01575	ctsP	314628..315224 (+)	597	WP_002779314.1	ATP-binding protein	Machinery gene
B4W62_RS01580	-	315221..315817 (+)	597	WP_002779313.1	CDC27 family protein	-
B4W62_RS01585	ctsE	315810..317372 (+)	1563	WP_002792052.1	GspE/PulE family protein	Machinery gene
B4W62_RS01590	ctsF	317359..318534 (+)	1176	WP_002781160.1	type II secretion system F family protein	Machinery gene
B4W62_RS01595	-	318531..319295 (-)	765	WP_002784060.1	TSUP family transporter	-
B4W62_RS01600	-	319298..320062 (-)	765	WP_002781156.1	TIGR02757 family protein	-
B4W62_RS01605	flgK	320079..321905 (-)	1827	WP_057992680.1	flagellar hook-associated protein FlgK	-
B4W62_RS01610	-	321915..322349 (-)	435	WP_002779263.1	flagellar protein FlgN	-
B4W62_RS01615	flgM	322392..322589 (-)	198	WP_002779262.1	flagellar biosynthesis anti-sigma factor FlgM	-
B4W62_RS01620	-	322652..322993 (-)	342	WP_002784057.1	hypothetical protein	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 45518.35 Da
• Isoelectric Point: 9.4461

>NTDB_id=219362 B4W62_RS01590 WP_002781160.1 317359..318534(+) (ctsF) [Campylobacter coli strain aerotolerant OR12]
MKLYELEIKGKTKQTKHLRAKNLNEAQAKAIAKKWEILNIKEIQKASFKRLDDARFILFFQELSLLCEVGISIKDALKEL
DKIYSHKMIAKLCDNLNLGQNLSLAFENANFGLTHAELALIKTSQNTGKLSEIFMQISRLRQNNVENEQRVKKALRYPLI
VFLSVCAAFVLLMLFVVPNFKDLFEDLNLALPFITELIIYIYNFLDKYILLVFCLIALILFLTLFLYRKYYFFSYFCDSL
LLKLPLLSKFIIYQQNYSFFMIFSLLLKSGISLLEAFKLATLALNNKKVLLYYQEIRTFMDSGLEISHAFKKVDLFDPLV
FSMLSIAMKSSKLEFLSEEIAKYYKNKSENLMDKFLSFLEPIMTLWVAILVLFLALGIFLPIWELSSGVNF

Nucleotide

• Length: 1176 bp

>NTDB_id=219362 B4W62_RS01590 WP_002781160.1 317359..318534(+) (ctsF) [Campylobacter coli strain aerotolerant OR12]
ATGAAGCTTTATGAGCTCGAGATTAAAGGCAAAACAAAACAGACAAAGCATTTAAGGGCTAAAAATTTAAACGAAGCTCA
AGCAAAAGCTATCGCTAAAAAATGGGAAATTTTAAATATCAAAGAGATACAAAAAGCAAGTTTTAAAAGATTAGATGATG
CAAGATTTATCCTTTTCTTTCAAGAATTATCTTTGCTTTGCGAAGTAGGAATCAGCATAAAAGATGCTTTAAAGGAGCTT
GATAAAATATATTCTCACAAGATGATTGCCAAGCTTTGCGATAATTTAAATTTAGGACAAAATTTAAGCCTTGCTTTTGA
AAATGCAAATTTTGGGCTTACTCATGCGGAATTAGCCCTTATTAAAACTTCCCAAAACACAGGAAAATTAAGTGAAATTT
TCATGCAAATTTCAAGATTAAGACAAAATAATGTAGAAAATGAACAAAGAGTCAAAAAAGCTTTAAGATATCCTTTGATT
GTTTTTTTAAGTGTGTGCGCGGCTTTTGTTTTACTCATGCTTTTTGTTGTGCCTAATTTTAAAGATTTATTTGAGGATTT
AAATTTAGCCTTACCCTTTATAACCGAGCTTATAATTTATATTTATAATTTTTTGGATAAGTATATTTTGCTTGTGTTTT
GTTTGATCGCACTTATTTTATTTCTTACTTTATTTTTGTATAGAAAATATTATTTCTTTTCATATTTTTGCGATAGCTTG
CTTTTAAAACTTCCTTTGTTGTCTAAATTTATTATTTATCAGCAAAATTATTCTTTTTTTATGATTTTCTCTTTACTTTT
AAAAAGCGGCATTTCTCTTTTGGAAGCTTTTAAATTAGCCACTTTGGCCTTAAATAATAAAAAGGTATTATTGTATTATC
AAGAAATTAGAACATTTATGGATTCTGGCCTTGAAATAAGTCACGCCTTTAAAAAAGTAGATCTTTTTGATCCTTTGGTT
TTTTCTATGTTGAGTATAGCTATGAAAAGTTCTAAGCTTGAGTTTTTGAGCGAGGAGATTGCGAAATATTATAAAAACAA
AAGTGAAAATTTAATGGACAAGTTTTTAAGCTTTTTAGAACCTATAATGACTTTATGGGTTGCGATTTTAGTATTGTTTT
TAGCACTTGGAATTTTTTTACCTATATGGGAACTTAGCTCAGGAGTAAATTTTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (262-381)

• Type II secretion system (T2SS), protein F (T2SSF) (59-178)

3D structure

• AlphaFold DB: A0A0Q2ISE7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsF	Campylobacter jejuni subsp. jejuni 81-176	60.66	100	0.611