Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   B4W62_RS01565 Genome accession   NZ_CP019977
Coordinates   312928..313239 (+) Length   103 a.a.
NCBI ID   WP_002822983.1    Uniprot ID   -
Organism   Campylobacter coli strain aerotolerant OR12     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 307928..318239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4W62_RS01555 - 308602..309240 (+) 639 WP_002792051.1 HAD family hydrolase -
  B4W62_RS01560 nifJ 309344..312904 (+) 3561 WP_002779317.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  B4W62_RS01565 ctsR 312928..313239 (+) 312 WP_002822983.1 hypothetical protein Machinery gene
  B4W62_RS01570 ctsD 313217..314635 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  B4W62_RS01575 ctsP 314628..315224 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  B4W62_RS01580 - 315221..315817 (+) 597 WP_002779313.1 CDC27 family protein -
  B4W62_RS01585 ctsE 315810..317372 (+) 1563 WP_002792052.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12239.28 Da        Isoelectric Point: 6.3244

>NTDB_id=219358 B4W62_RS01565 WP_002822983.1 312928..313239(+) (ctsR) [Campylobacter coli strain aerotolerant OR12]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITAKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=219358 B4W62_RS01565 WP_002822983.1 312928..313239(+) (ctsR) [Campylobacter coli strain aerotolerant OR12]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTGCAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

54.902

99.029

0.544

Multiple sequence alignment