Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   A9237_RS11350 Genome accession   NZ_CP019959
Coordinates   2450216..2450833 (-) Length   205 a.a.
NCBI ID   WP_009707563.1    Uniprot ID   -
Organism   Vibrio owensii strain XSBZ03     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2445216..2455833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9237_RS11335 (A9237_11335) aceF 2446276..2448210 (+) 1935 WP_078608197.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  A9237_RS11340 (A9237_11340) lpdA 2448454..2449884 (+) 1431 WP_005438019.1 dihydrolipoyl dehydrogenase -
  A9237_RS11350 (A9237_11350) opaR 2450216..2450833 (-) 618 WP_009707563.1 transcriptional regulator OpaR Regulator
  A9237_RS11355 (A9237_11355) hpt 2451154..2451684 (+) 531 WP_005439354.1 hypoxanthine phosphoribosyltransferase -
  A9237_RS11360 (A9237_11360) can 2451773..2452441 (-) 669 WP_005439355.1 carbonate dehydratase -
  A9237_RS11365 (A9237_11365) - 2452725..2454395 (+) 1671 WP_020196604.1 SulP family inorganic anion transporter -
  A9237_RS11370 (A9237_11370) - 2454632..2455549 (+) 918 WP_078608199.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23710.99 Da        Isoelectric Point: 6.2211

>NTDB_id=219209 A9237_RS11350 WP_009707563.1 2450216..2450833(-) (opaR) [Vibrio owensii strain XSBZ03]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFHGICYSIFVQANRSKSEAELSTLVSAYLDMLCIYNREHH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=219209 A9237_RS11350 WP_009707563.1 2450216..2450833(-) (opaR) [Vibrio owensii strain XSBZ03]
ATGGACTCAATAGCAAAGAGACCTCGTACTAGGCTTTCCCCTCTAAAACGTAAACAGCAACTGATGGAAATCGCTCTTGA
AGTGTTTGCTCGTCGCGGCATTGGTCGTGGTGGTCACGCGGATATTGCAGAGATCGCTCAAGTTTCTGTTGCGACGGTAT
TTAACTACTTCCCTACTCGTGAAGACTTAGTGGATGAAGTTCTGAACCACGTTGTTCGTCAATTCTCGAACTTCTTGTCT
GATAACATCGACTTAGACATCCATGCACGCGAGAACATCGCCAACATCACTAATGCAATGATTGAGCTAGTAAGCCAAGA
TTGCCATTGGCTGAAGGTTTGGTTCGAATGGAGCGCATCGACACGTGATGAAGTATGGCCGTTATTCGTGACCACAAACC
GCACAAACCAACTATTGGTGCAAAACATGTTCATCAAAGCGATCGAACGTGGTGAAGTTTGTGACCAACATGAACCGGAA
CATTTGGCGAATCTGTTCCACGGTATTTGCTACTCTATCTTCGTACAAGCGAACCGCTCTAAGAGCGAAGCTGAGCTATC
AACGCTCGTTAGCGCTTACCTAGATATGCTGTGCATCTACAACCGTGAACATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

96.078

99.512

0.956
  hapR Vibrio cholerae C6706

71.717

96.585

0.693
  hapR Vibrio cholerae strain A1552

71.717

96.585

0.693

Multiple sequence alignment