Detailed information NTG0219200

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: LLG50_RS10025
• Genome accession: NZ_CP025500
• Coordinates: 2048314..2049390 (+)
• Length: 358 a.a.
• NCBI ID: WP_010906242.1
• Uniprot ID: Q9CE70
• Organism: Lactococcus lactis subsp. lactis strain G50
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2043314..2054390

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LLG50_RS10000 (LLG50_10000)	pgsA	2043422..2043994 (-)	573	WP_103055128.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
LLG50_RS10005 (LLG50_10005)	-	2044035..2044931 (-)	897	WP_025016931.1	helix-turn-helix domain-containing protein	-
LLG50_RS10010 (LLG50_10010)	yfmH	2045195..2046478 (-)	1284	WP_201261398.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
LLG50_RS10015 (LLG50_10015)	yfmF	2046468..2047754 (-)	1287	WP_201261399.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
LLG50_RS10020 (LLG50_10020)	yaaA	2047952..2048314 (+)	363	WP_103055129.1	S4 domain-containing protein YaaA	-
LLG50_RS10025 (LLG50_10025)	recF	2048314..2049390 (+)	1077	WP_010906242.1	DNA replication/repair protein RecF	Machinery gene
LLG50_RS10030 (LLG50_10030)	-	2049477..2049845 (-)	369	WP_103055130.1	carboxymuconolactone decarboxylase family protein	-
LLG50_RS10035 (LLG50_10035)	-	2049923..2050300 (+)	378	WP_015427093.1	MerR family transcriptional regulator	-
LLG50_RS10040 (LLG50_10040)	-	2050313..2051248 (-)	936	WP_103055131.1	alpha/beta hydrolase	-
LLG50_RS10045 (LLG50_10045)	galE	2051353..2052333 (-)	981	WP_103055132.1	UDP-glucose 4-epimerase GalE	-

Sequence

Protein

• Length: 358 a.a.
• Molecular weight: 41356.23 Da
• Isoelectric Point: 6.8652

>NTDB_id=219200 LLG50_RS10025 WP_010906242.1 2048314..2049390(+) (recF) [Lactococcus lactis subsp. lactis strain G50]
MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKELISWSQQEMKVSGVVEKAHAT
VPLEVQLSPKGRIAKANHLKENRLADYIGQLKILMFAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKER
NAYLKFDKDKIDKNFLSVLDGQLAEHGNKIMLERQNFIDKLEVHAKKIHEQLTHGKENLKIIYNQNVKTDFSKELLSRQD
HDIFRHQTSVGPHRDDLQFFINEINVADFGSQGQQRTVALSIKLAEIDLIFEETGEYPILLLDDVMSELDNHRQLDLIET
SLGKTQTFITTTTLDHLKNLPENLSIFHVNAGTIEQEQ

Nucleotide

• Length: 1077 bp

>NTDB_id=219200 LLG50_RS10025 WP_010906242.1 2048314..2049390(+) (recF) [Lactococcus lactis subsp. lactis strain G50]
ATGAAACTCAAAGCAATTGAACTCAAAAATTTTCGTAATTATGAGGAATTAAAACTTGATTTTCATCCTAATCTCAATAT
TTTTTTAGGACAAAATGCTCAAGGGAAAACAAATATTCTTGAGGCGATTCATTTTTTAGCACTCACTCGTAGTCACAGAA
CAAGTCACGACAAAGAGCTCATTTCTTGGTCGCAACAAGAAATGAAAGTCTCAGGAGTCGTTGAAAAAGCTCATGCAACT
GTTCCACTTGAAGTTCAATTAAGTCCAAAAGGGAGAATTGCTAAAGCCAATCATCTCAAAGAAAATCGCTTAGCCGACTA
CATTGGTCAACTAAAAATCTTGATGTTTGCACCTGAAAATTTGGAATTAGTCAAAGGTTCTCCAGCTACCCGCAGAAAAT
TTATGGATATTGAACTGGGACAAATCCATGCGGTTTACCTTTATGATTCCATGCGATATAATCGTGCGTTAAAAGAACGG
AATGCTTACTTAAAATTTGATAAAGACAAAATTGATAAAAATTTTTTAAGTGTTCTTGACGGACAATTAGCTGAACATGG
TAATAAAATCATGCTTGAGCGGCAAAATTTTATTGATAAACTTGAAGTTCATGCAAAAAAAATCCATGAGCAACTTACTC
ATGGTAAAGAAAATTTAAAAATCATTTATAATCAAAATGTGAAAACTGACTTTTCAAAAGAATTATTGAGCAGACAAGAC
CATGATATTTTTAGGCATCAAACATCGGTTGGACCTCATCGTGACGATTTACAATTTTTTATCAATGAGATTAATGTTGC
TGATTTTGGTAGTCAAGGACAACAACGAACCGTTGCTCTCTCAATTAAATTAGCAGAAATTGATTTAATTTTTGAAGAGA
CTGGTGAGTATCCGATTTTACTTTTAGATGATGTCATGAGTGAATTAGACAATCATCGTCAACTTGATTTGATTGAAACA
AGTTTGGGTAAAACACAAACTTTTATAACTACAACTACTCTTGATCATCTTAAAAATTTACCTGAAAATCTGAGTATTTT
CCATGTTAATGCTGGAACCATTGAACAAGAGCAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-353)

3D structure

• AlphaFold DB: Q9CE70

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	55	100	0.553
recF	Bacillus subtilis subsp. subtilis str. 168	45.977	97.207	0.447