Detailed information NTG0219172

Bioinformatically predicted

Overview

• Name: xerS
• Type: Machinery gene
• Locus tag: LLG50_RS05895
• Genome accession: NZ_CP025500
• Coordinates: 1204845..1205915 (-)
• Length: 356 a.a.
• NCBI ID: WP_003131037.1
• Uniprot ID: Q9CG78
• Organism: Lactococcus lactis subsp. lactis strain G50
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1199845..1210915

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LLG50_RS05880 (LLG50_05880)	dprA	1200143..1200991 (+)	849	WP_103054748.1	DNA-processing protein DprA	Machinery gene
LLG50_RS05885 (LLG50_05885)	topA	1201253..1203385 (+)	2133	WP_003131148.1	type I DNA topoisomerase	-
LLG50_RS05890 (LLG50_05890)	trmFO	1203457..1204800 (+)	1344	WP_103054749.1	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	-
LLG50_RS05895 (LLG50_05895)	xerS	1204845..1205915 (-)	1071	WP_003131037.1	tyrosine recombinase XerS	Machinery gene
LLG50_RS05900 (LLG50_05900)	-	1206400..1206687 (-)	288	WP_015426413.1	hypothetical protein	-
LLG50_RS05905 (LLG50_05905)	xerS	1206771..1207826 (-)	1056	WP_103054750.1	tyrosine recombinase XerS	Machinery gene
LLG50_RS05910 (LLG50_05910)	-	1208354..1208644 (+)	291	WP_103054751.1	hypothetical protein	-
LLG50_RS05915 (LLG50_05915)	-	1208707..1209528 (-)	822	Protein_1132	dihydrodipicolinate synthase family protein	-
LLG50_RS05920 (LLG50_05920)	-	1209612..1210814 (-)	1203	WP_103054752.1	MFS transporter	-

Sequence

Protein

• Length: 356 a.a.
• Molecular weight: 41397.21 Da
• Isoelectric Point: 9.6568

>NTDB_id=219172 LLG50_RS05895 WP_003131037.1 1204845..1205915(-) (xerS) [Lactococcus lactis subsp. lactis strain G50]
MKREQLIQNIEKLKHIMPSYVLEYYQSKLTIPYSLNTLYEYLKEYERFFSWLVDSGVADVDKITDVSLSVLENLTKRDLE
SFILYLRERPRLNTRSTRYGVSQTTINRTLSALSSLYKYLTEEVENEDGEPYFYRNVMKKVQTKKKSETLASRAENIKGK
LFLGDETQGFLDYIDNEYEKTLSNRARSSFFKNKERDLAIIALILASGIRLSEAVNVDLRDLNLITMVVEVTRKGGKRDA
VPYAPFAKTYFERYLEVRSQRYKTTAKDTAFFVTLYRDVPSRIDPSSVEKLVAKYSQAFKVRVTPHKLRHTLATRLYAQT
NSQVLVSNQLGHASTQVTDLYTHIINEEQKNALDNL

Nucleotide

• Length: 1071 bp

>NTDB_id=219172 LLG50_RS05895 WP_003131037.1 1204845..1205915(-) (xerS) [Lactococcus lactis subsp. lactis strain G50]
ATGAAACGTGAACAATTAATACAAAATATTGAAAAACTAAAACATATCATGCCTTCTTATGTTTTAGAATATTATCAATC
TAAACTTACTATTCCTTATAGTTTGAATACACTTTATGAATATCTTAAAGAATATGAACGTTTCTTTAGTTGGTTGGTCG
ATTCTGGAGTTGCTGATGTTGATAAGATAACTGATGTTTCCCTCTCTGTTTTAGAAAACTTAACTAAACGAGATTTGGAG
TCATTTATCCTCTATCTTAGGGAGAGACCCCGTTTAAATACGCGCTCTACTCGTTATGGGGTAAGTCAAACAACAATTAA
TCGTACTCTATCTGCTCTTTCTAGTCTTTATAAATACCTTACTGAAGAGGTTGAAAATGAAGATGGTGAGCCTTACTTCT
ATCGTAATGTTATGAAGAAGGTACAGACTAAGAAAAAATCCGAAACTTTAGCTTCTCGTGCTGAGAATATTAAAGGGAAG
CTTTTTTTGGGAGATGAAACTCAAGGTTTTCTTGACTATATTGATAATGAATATGAAAAAACATTATCAAATAGAGCTCG
TTCTAGTTTTTTCAAAAATAAAGAACGTGATTTAGCAATTATTGCACTTATTTTAGCCTCTGGTATTCGTCTTTCTGAGG
CAGTTAATGTAGATTTAAGAGATTTAAATCTTATTACTATGGTTGTTGAGGTGACTCGTAAAGGAGGAAAAAGGGATGCT
GTTCCTTATGCTCCTTTTGCCAAAACTTATTTTGAAAGATACTTGGAAGTACGAAGTCAACGTTATAAGACTACAGCGAA
AGATACGGCATTTTTTGTGACACTTTATAGAGATGTTCCTAGCCGAATAGATCCTTCTAGTGTTGAAAAATTAGTTGCTA
AATATTCTCAAGCTTTTAAAGTGCGAGTGACCCCTCACAAGCTTAGACATACACTTGCGACTCGACTTTATGCTCAAACA
AATTCTCAGGTATTGGTGAGCAATCAGTTAGGGCATGCTTCAACTCAAGTTACAGACCTTTATACTCATATTATCAATGA
AGAACAAAAAAATGCTCTAGATAATCTATAA

Domains

Predicted by InterProScan.

• Phage integrase family (Phage_integrase) (182-344)

• Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4) (33-122)

3D structure

• AlphaFold DB: Q9CG78

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xerS	Streptococcus pneumoniae R6	76.685	100	0.767