Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   A9237_RS01355 Genome accession   NZ_CP019959
Coordinates   309232..310653 (+) Length   473 a.a.
NCBI ID   WP_078607329.1    Uniprot ID   -
Organism   Vibrio owensii strain XSBZ03     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 304232..315653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9237_RS01335 (A9237_01335) - 304613..305224 (-) 612 WP_078607321.1 flavin reductase family protein -
  A9237_RS01340 (A9237_01340) - 305901..306596 (+) 696 WP_078607323.1 NAD(P)H-binding protein -
  A9237_RS01345 (A9237_01345) - 306789..308162 (+) 1374 WP_078607325.1 L-cystine transporter -
  A9237_RS01350 (A9237_01350) - 308389..309069 (+) 681 WP_078607327.1 DUF1826 domain-containing protein -
  A9237_RS01355 (A9237_01355) sbcB 309232..310653 (+) 1422 WP_078607329.1 exodeoxyribonuclease I Machinery gene
  A9237_RS01360 (A9237_01360) - 310712..311086 (+) 375 WP_005439820.1 CidA/LrgA family protein -
  A9237_RS01365 (A9237_01365) - 311088..311765 (+) 678 WP_009705896.1 LrgB family protein -
  A9237_RS01370 (A9237_01370) cdd 312031..312918 (+) 888 WP_005439818.1 cytidine deaminase -
  A9237_RS01375 (A9237_01375) purT 313066..314241 (+) 1176 WP_078607332.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  A9237_RS01380 (A9237_01380) - 314321..314971 (-) 651 WP_078607334.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54599.87 Da        Isoelectric Point: 4.8831

>NTDB_id=219173 A9237_RS01355 WP_078607329.1 309232..310653(+) (sbcB) [Vibrio owensii strain XSBZ03]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVENGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFYSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKREELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=219173 A9237_RS01355 WP_078607329.1 309232..310653(+) (sbcB) [Vibrio owensii strain XSBZ03]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGTCCAAG
TCAGTTCGCAGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTCATGTACTGTCGCCCACCTGCTG
ATTATCTCCCTTCGCCAGAAGCTGCTTTGATCACTGGTATTACGCCACAAAAAGCCATGCAAGAAGGCCTACCTGAACCT
GAGTTTATCGCCAAGATCCACGCTGAGCTTTCTAAACCAAACACAACGAGCCTTGGTTACAACAGCATCCGTTTCGATGA
TGAAGTCACTCGTTACACTTGTTACCGCAACTTTATCGACCCGTATGCGTGGAGCTGGCAAAACGGTAACTCGCGCTGGG
ATTTGCTCGATGTGATGCGAGCGTGTCATGCCCTTCGTCCTGAGGGCGTGGAATGGCCGGAGAATGATGAAGGCTTTACG
AGTTTCAAGCTTGAGCATTTATCTGTGGAAAATGGCATTGAACACAGCAATGCCCACGATGCGATGGCAGATGTAATTGC
TACTATTGAGATGGCGAAGAAAGTCAAAGCCGCGCAACCAAAGCTGTTTGATTACTTTTACTCGATGCGTAACAAGCGTA
AACTGAACGAGTTAGTCGATATTGTAAACATGACGCCATTGATGCACGTATCAGGCATGTTGGGACGTGAGTGCCAATAC
ACAAGCTGGATTGTTCCTGTGGCTTGGCATCCAACCAACAATAACGCCGTCATCACAATTGATTTAGCCAAAGATCCTCA
GCCTATTCTTGAGCTTTCAGCAGAAGAGTTGAAAGAGCGTTTGTACACCAAGCGTGAAGAACTGGGTGACTTATTGCCTG
TACCCGTAAAGCTCGTACATCTGAACAAGTGCCCTATCCTTGCTCCAGCTAAAACGTTAACGGCAGAGAACGCAGAAGTA
ATTGGAATCGACCGTCAGAAATGTTTGAGTAATCTAGCACTGCTGCGTCAACACCCAGAAATCCGTGAGAAGCTAATTAG
TCTATTCTCTATTGAGCGTGAGTTCGAAAAGAGCGATGATGTGGATACGCAACTGTACGATGGCTTCTTTTCACCAGCAG
ATCGCGCAGCGATGGACATCATTCGTGAAACAGATCCAAATAACCTTGCTGCGCTGGATATTGAGTTTGATGACAAACGC
ATCAAGCCATTGCTGTTCCGTTACCGTGCCCGTCACTACGCCGGCACACTGGATGAACAAGAACAAAGACGTTGGGCACA
ACACTGTCGTGAAGTTTTCGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCGATACTAAAATCCGTCTATCGTTATGTAGAGAGCTTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.281

100

0.793

Multiple sequence alignment