Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AOZ05_RS11800 Genome accession   NZ_CP019945
Coordinates   2239204..2239599 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BA01611     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2234204..2244599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOZ05_RS11770 thiE 2234667..2235308 (-) 642 WP_000483155.1 thiamine phosphate synthase -
  AOZ05_RS11775 thiM 2235301..2236101 (-) 801 WP_031590212.1 hydroxyethylthiazole kinase -
  AOZ05_RS11780 thiD 2236085..2236915 (-) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  AOZ05_RS11785 tenA 2236908..2237597 (-) 690 WP_000396077.1 thiaminase II -
  AOZ05_RS11795 sceD 2238121..2238816 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  AOZ05_RS11800 ssb 2239204..2239599 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  AOZ05_RS11805 - 2239793..2240233 (+) 441 WP_000846746.1 YwpF-like family protein -
  AOZ05_RS11810 fabZ 2240292..2240732 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  AOZ05_RS11815 murA 2240766..2242031 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  AOZ05_RS11820 - 2242142..2242375 (-) 234 WP_000384523.1 DUF1146 family protein -
  AOZ05_RS11825 - 2242507..2242599 (-) 93 WP_001790611.1 hypothetical protein -
  AOZ05_RS11830 - 2242937..2243341 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=219058 AOZ05_RS11800 WP_000932694.1 2239204..2239599(-) (ssb) [Staphylococcus aureus strain BA01611]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=219058 AOZ05_RS11800 WP_000932694.1 2239204..2239599(-) (ssb) [Staphylococcus aureus strain BA01611]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment