Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   AOZ05_RS05555 Genome accession   NZ_CP019945
Coordinates   1049778..1050764 (+) Length   328 a.a.
NCBI ID   WP_000959292.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BA01611     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1044778..1055764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOZ05_RS05530 opp4B 1044991..1045953 (+) 963 WP_000239820.1 oligopeptide ABC transporter permease -
  AOZ05_RS05535 opp4C 1045965..1046846 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  AOZ05_RS05540 trpS 1046888..1047877 (-) 990 WP_031589556.1 tryptophan--tRNA ligase -
  AOZ05_RS05545 spxA 1048172..1048567 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  AOZ05_RS05550 mecA 1048938..1049657 (+) 720 WP_001217723.1 adaptor protein MecA -
  AOZ05_RS05555 coiA 1049778..1050764 (+) 987 WP_000959292.1 competence protein CoiA Machinery gene
  AOZ05_RS05560 pepF 1050812..1052620 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  AOZ05_RS05565 yjbH 1053080..1053886 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  AOZ05_RS05570 - 1053909..1054274 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  AOZ05_RS05575 - 1054378..1054971 (-) 594 WP_000224611.1 CYTH domain-containing protein -
  AOZ05_RS05580 - 1055157..1055504 (+) 348 WP_031589545.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38884.55 Da        Isoelectric Point: 9.7683

>NTDB_id=219031 AOZ05_RS05555 WP_000959292.1 1049778..1050764(+) (coiA) [Staphylococcus aureus strain BA01611]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGFKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=219031 AOZ05_RS05555 WP_000959292.1 1049778..1050764(+) (coiA) [Staphylococcus aureus strain BA01611]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATTTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.39

100

0.994
  coiA Staphylococcus aureus N315

97.561

100

0.976

Multiple sequence alignment