Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   AOZ05_RS03170 Genome accession   NZ_CP019945
Coordinates   619669..620238 (+) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BA01611     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 614669..625238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOZ05_RS03145 cysE 615882..616529 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  AOZ05_RS03150 cysS 616513..617913 (+) 1401 WP_000631973.1 cysteine--tRNA ligase -
  AOZ05_RS03155 - 617906..618310 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  AOZ05_RS03160 rlmB 618318..619064 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  AOZ05_RS03165 - 619064..619588 (+) 525 WP_000664738.1 NYN domain-containing protein -
  AOZ05_RS03170 sigH 619669..620238 (+) 570 WP_000872876.1 sigma-70 family RNA polymerase sigma factor Regulator
  AOZ05_RS03175 rpmG 620353..620496 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  AOZ05_RS03180 secE 620552..620734 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  AOZ05_RS03185 nusG 620747..621295 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  AOZ05_RS03190 rplK 621476..621898 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  AOZ05_RS03195 rplA 622106..622798 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  AOZ05_RS03200 rplJ 623070..623570 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  AOZ05_RS03205 rplL 623613..623981 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  AOZ05_RS03210 - 624156..624764 (+) 609 WP_000020302.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=219025 AOZ05_RS03170 WP_000872876.1 619669..620238(+) (sigH) [Staphylococcus aureus strain BA01611]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=219025 AOZ05_RS03170 WP_000872876.1 619669..620238(+) (sigH) [Staphylococcus aureus strain BA01611]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984

Multiple sequence alignment