Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicK   Type   Regulator
Locus tag   SPSF3K_RS04150 Genome accession   NZ_CP025420
Coordinates   819226..820587 (+) Length   453 a.a.
NCBI ID   WP_004234616.1    Uniprot ID   A0ABN0IU30
Organism   Streptococcus parauberis strain SPOF3K     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 814226..825587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPSF3K_RS04120 (SPSF3K_00841) - 814258..815280 (+) 1023 WP_003105201.1 DUF3114 domain-containing protein -
  SPSF3K_RS04125 (SPSF3K_00842) - 815288..815935 (-) 648 WP_003104005.1 amino acid ABC transporter permease -
  SPSF3K_RS04130 (SPSF3K_00843) - 815950..816654 (-) 705 WP_003104614.1 amino acid ABC transporter permease -
  SPSF3K_RS04135 (SPSF3K_00844) - 816668..817483 (-) 816 WP_003106354.1 transporter substrate-binding domain-containing protein -
  SPSF3K_RS04140 (SPSF3K_00845) - 817496..818275 (-) 780 WP_003106355.1 amino acid ABC transporter ATP-binding protein -
  SPSF3K_RS04145 (SPSF3K_00846) yycF 818523..819233 (+) 711 WP_003102576.1 response regulator YycF -
  SPSF3K_RS04150 (SPSF3K_00847) vicK 819226..820587 (+) 1362 WP_004234616.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SPSF3K_RS04155 (SPSF3K_00848) vicX 820592..821401 (+) 810 WP_037619792.1 MBL fold metallo-hydrolase Regulator
  SPSF3K_RS04160 (SPSF3K_00849) rnc 821499..822191 (+) 693 WP_003103277.1 ribonuclease III -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 51935.33 Da        Isoelectric Point: 4.9370

>NTDB_id=218955 SPSF3K_RS04150 WP_004234616.1 819226..820587(+) (vicK) [Streptococcus parauberis strain SPOF3K]
MTNNIIGNLSLFEISILLLLIFVAIYFVHLAVRDYRNAKIIKQMSQKIRDLINGRYTDDINLRADMELMDLSEQLNDLSD
VFRLTHENLAQEKNRLASILAYMTDGVLATDRSGQILMINETAQNQLNMTKEQALKKNITDLLDADEPYTYRELVSKTPI
VTISRRDETGEFNSLRLRFALNRRESGFISGLVVVIHDTTEQEKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGAIK
EDIAPSFIKVSLDETNRMMRMITDLLNLSRIDNQATRLTVEMTNFTAFMTSILNRFDLVKNQNTISGKSYEIIRDYPINS
IWVEIDNDKMTQVVENILNNAIKYSPDGGKITVKMKTTDNQLIISISDQGLGIPKKDLPLIFDRFYRVDKARSRAQGGTG
LGLAIAKEIIKQHQGFIWAKSEYSKGSTFTIVLPYDKEAVMYDDVDEWEDEID

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=218955 SPSF3K_RS04150 WP_004234616.1 819226..820587(+) (vicK) [Streptococcus parauberis strain SPOF3K]
ATGACTAATAATATTATAGGAAATTTATCCTTATTTGAAATATCGATTCTCTTACTTTTGATTTTTGTTGCCATTTACTT
TGTACATTTGGCAGTTCGTGATTATCGTAATGCAAAAATCATTAAACAGATGAGTCAAAAAATTAGAGACTTAATCAATG
GACGCTATACAGACGATATTAACTTGCGTGCTGATATGGAATTAATGGATTTATCTGAGCAATTAAATGATTTATCAGAT
GTTTTTCGGTTAACCCATGAGAATTTGGCCCAAGAAAAAAATCGTTTAGCGTCGATTTTGGCTTATATGACCGATGGAGT
CTTAGCGACCGACCGTTCTGGTCAGATTTTGATGATCAATGAAACGGCTCAAAATCAGCTTAACATGACCAAAGAGCAAG
CACTTAAAAAGAATATTACGGATTTGTTAGATGCTGATGAACCCTATACATATCGGGAGTTAGTTTCTAAAACACCAATT
GTTACAATTAGTCGGCGTGATGAAACTGGAGAATTTAATTCGTTAAGGTTACGTTTTGCTTTGAATAGAAGAGAGAGTGG
CTTTATTTCTGGTTTAGTTGTTGTAATCCATGATACAACAGAGCAAGAAAAAGAAGAACGTGAACGACGCTTATTTGTTT
CTAACGTAAGTCATGAATTGCGGACACCGCTCACGTCTGTAAAATCTTATTTGGAAGCATTGGATGAAGGTGCCATAAAA
GAAGATATTGCTCCAAGTTTCATCAAGGTTTCATTAGATGAAACAAACCGGATGATGCGAATGATAACTGATCTCTTGAA
CTTATCAAGAATTGATAATCAGGCGACTCGTTTGACGGTTGAGATGACCAATTTCACTGCCTTTATGACTTCTATCTTGA
ATCGTTTTGATTTGGTCAAAAACCAAAATACCATTTCAGGTAAAAGTTATGAGATTATTCGAGATTATCCAATTAACTCA
ATTTGGGTTGAAATTGATAATGATAAGATGACTCAAGTCGTTGAAAACATTTTGAATAATGCTATTAAATATTCACCTGA
TGGTGGTAAAATTACAGTTAAAATGAAAACAACTGATAATCAGCTCATTATTTCCATTTCTGATCAAGGATTGGGTATTC
CGAAAAAAGATTTACCTCTTATTTTTGACCGCTTTTATCGGGTGGATAAAGCAAGAAGTCGTGCGCAAGGTGGGACTGGG
CTGGGCTTAGCAATTGCAAAAGAGATAATTAAACAGCATCAAGGCTTTATTTGGGCTAAAAGTGAGTATAGTAAAGGTTC
AACTTTTACAATAGTCTTACCATATGATAAAGAAGCTGTTATGTATGATGATGTTGATGAATGGGAGGACGAAATCGACT
AA

Domains

Predicted by InterProScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(326-436)

PAS fold (PAS)

(95-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicK Streptococcus mutans UA159

72.222

91.391

0.66
  micB Streptococcus pneumoniae Cp1015

67.681

94.26

0.638

Multiple sequence alignment