Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SPSF3K_RS00940 Genome accession   NZ_CP025420
Coordinates   186877..188586 (+) Length   569 a.a.
NCBI ID   WP_004235128.1    Uniprot ID   A0ABN0IQC1
Organism   Streptococcus parauberis strain SPOF3K     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 181877..193586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPSF3K_RS00915 (SPSF3K_00190) - 183064..183591 (+) 528 WP_004235118.1 5-formyltetrahydrofolate cyclo-ligase -
  SPSF3K_RS00920 (SPSF3K_00191) - 183588..184262 (+) 675 WP_003107780.1 rhomboid family intramembrane serine protease -
  SPSF3K_RS00925 (SPSF3K_00192) galU 184285..185190 (-) 906 WP_004235122.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  SPSF3K_RS00930 (SPSF3K_00193) - 185212..186228 (-) 1017 WP_003107779.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  SPSF3K_RS00935 (SPSF3K_00194) rcrR 186435..186884 (+) 450 WP_004235125.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  SPSF3K_RS00940 (SPSF3K_00195) rcrP 186877..188586 (+) 1710 WP_004235128.1 ABC transporter ATP-binding protein Regulator
  SPSF3K_RS00945 (SPSF3K_00196) - 188586..190370 (+) 1785 WP_013794470.1 ABC transporter ATP-binding protein -
  SPSF3K_RS00950 (SPSF3K_00197) - 190420..191679 (-) 1260 WP_004235131.1 NAD(P)H-dependent oxidoreductase -
  SPSF3K_RS00955 (SPSF3K_00198) - 191698..192300 (-) 603 WP_003104239.1 NADPH-dependent FMN reductase -
  SPSF3K_RS00960 (SPSF3K_00199) - 192480..192839 (+) 360 WP_004235135.1 YbaN family protein -
  SPSF3K_RS00965 (SPSF3K_00200) - 192998..193441 (+) 444 WP_004235137.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 569 a.a.        Molecular weight: 62857.68 Da        Isoelectric Point: 5.6446

>NTDB_id=218916 SPSF3K_RS00940 WP_004235128.1 186877..188586(+) (rcrP) [Streptococcus parauberis strain SPOF3K]
MLKNAIMRYKWYALGSVLMIIAVVASALLQPHYLKDVLSAVMKNDTDKITEVGQLLLIIAGVGLIAGTVNTILAAKIAQG
VSADIREKVFRKIQSFSYANVEEFNAGNLVVRMTNDVNQIQNLVMMIFQVLLRLPILFIGAFIMAVNTLPKLWWVIILMV
VLIAIIMALVMSQMGPRFGKFQTLMDKINRIAKENLRGVRVVKSFVQEREQYAKFKETSNELLDLNMFIGYGFSMMQPAL
MLVSYLAVFVSLLLVSKMVKTDPTVIGSIASFMTYMMQIMFSIIMVGFMGMQASRAFISIGRLKEVLETEPAMTFATEDV
EDLNGDIVFDHVSFSYPNEEDAMLKDISFSIKSGQMVGVVGATGAGKSTLAQLIPRLFDPQEGTITIGGKDLKTLSQQTL
RETVSIVLQKAILFSGTIADNLRQGNLTADLQAMESAARIAQAQEFIDRMDLAYESEVEERGNNFSGGQKQRMSIARGVI
SNPKVLVLDDSTSALDAKSEKLVQEALNKDLKDTTTIIIAQKISSVVKADTILVLDEGKLIGQGTHAELVANNAVYREIY
DTQKGKEED

Nucleotide


Download         Length: 1710 bp        

>NTDB_id=218916 SPSF3K_RS00940 WP_004235128.1 186877..188586(+) (rcrP) [Streptococcus parauberis strain SPOF3K]
ATGCTTAAAAATGCCATCATGCGTTATAAATGGTATGCCCTAGGTTCTGTCTTAATGATCATAGCAGTTGTAGCAAGTGC
ATTGTTACAACCTCATTATCTGAAAGATGTGCTAAGTGCAGTCATGAAAAATGACACAGATAAAATTACAGAAGTTGGAC
AGTTATTATTGATTATTGCAGGAGTTGGTTTAATTGCCGGTACTGTCAATACCATTTTAGCAGCTAAGATAGCTCAAGGT
GTATCAGCTGATATCCGTGAGAAGGTATTTAGAAAAATCCAAAGTTTTTCATATGCTAATGTTGAGGAATTTAATGCTGG
TAATTTAGTTGTTCGTATGACCAACGATGTTAACCAAATCCAAAACTTGGTGATGATGATTTTCCAAGTCTTGCTCCGTT
TACCGATTTTATTTATAGGTGCCTTTATTATGGCGGTTAACACTTTACCAAAACTATGGTGGGTTATTATCCTGATGGTT
GTATTAATTGCTATTATTATGGCCCTTGTTATGAGTCAAATGGGCCCACGTTTTGGGAAGTTCCAAACCTTGATGGATAA
AATTAATCGTATTGCTAAAGAGAATCTACGTGGTGTTCGTGTCGTTAAATCGTTCGTTCAAGAAAGAGAACAATATGCTA
AATTCAAAGAGACATCAAATGAACTATTAGATCTTAATATGTTTATTGGGTACGGTTTTTCAATGATGCAACCAGCTTTA
ATGCTAGTTTCGTATTTAGCTGTTTTTGTATCACTCTTATTAGTTTCCAAGATGGTAAAAACAGATCCAACAGTTATAGG
TAGTATTGCTTCCTTCATGACTTATATGATGCAAATCATGTTTTCAATTATTATGGTTGGATTCATGGGGATGCAAGCTA
GTCGTGCTTTTATTTCAATTGGTCGTCTGAAAGAAGTTTTAGAGACAGAACCTGCAATGACTTTTGCTACTGAAGACGTT
GAAGATTTAAATGGCGATATTGTTTTTGATCATGTATCTTTCTCATATCCAAATGAAGAAGATGCTATGTTAAAAGATAT
TTCCTTCTCTATTAAATCTGGGCAAATGGTTGGTGTCGTTGGCGCAACAGGTGCCGGAAAATCAACCTTGGCTCAATTAA
TTCCTCGTTTATTTGACCCACAAGAGGGTACAATCACAATTGGTGGTAAAGATTTAAAAACACTCAGCCAACAAACACTC
CGCGAAACAGTTTCAATTGTTTTGCAAAAAGCCATTCTCTTTTCGGGGACTATTGCAGATAACCTTCGCCAAGGAAATTT
AACAGCTGATTTACAAGCTATGGAAAGTGCTGCTAGAATCGCGCAAGCTCAAGAATTTATTGACCGAATGGATTTAGCCT
ACGAAAGTGAAGTTGAAGAACGTGGAAATAATTTCTCTGGTGGTCAGAAACAACGGATGTCCATTGCTCGTGGGGTTATC
AGTAATCCCAAGGTCTTAGTCTTGGACGATTCAACGTCAGCCTTAGATGCTAAGTCAGAGAAACTAGTCCAAGAAGCTTT
AAACAAGGACTTGAAAGATACAACAACAATTATCATTGCACAAAAGATTTCGTCAGTGGTTAAAGCCGATACTATCTTAG
TTTTAGATGAAGGTAAGTTAATTGGTCAAGGAACCCATGCTGAATTAGTAGCAAATAATGCAGTCTACCGTGAAATTTAT
GATACACAGAAAGGTAAGGAGGAAGACTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(16-282)

ABC transporter (ABC_tran)

(344-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

35.017

100

0.366

Multiple sequence alignment