Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   SPSF3K_RS00935 Genome accession   NZ_CP025420
Coordinates   186435..186884 (+) Length   149 a.a.
NCBI ID   WP_004235125.1    Uniprot ID   A0ABN0IQ85
Organism   Streptococcus parauberis strain SPOF3K     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 181435..191884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPSF3K_RS00910 (SPSF3K_00189) - 181584..182951 (-) 1368 WP_004235115.1 MATE family efflux transporter -
  SPSF3K_RS00915 (SPSF3K_00190) - 183064..183591 (+) 528 WP_004235118.1 5-formyltetrahydrofolate cyclo-ligase -
  SPSF3K_RS00920 (SPSF3K_00191) - 183588..184262 (+) 675 WP_003107780.1 rhomboid family intramembrane serine protease -
  SPSF3K_RS00925 (SPSF3K_00192) galU 184285..185190 (-) 906 WP_004235122.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  SPSF3K_RS00930 (SPSF3K_00193) - 185212..186228 (-) 1017 WP_003107779.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  SPSF3K_RS00935 (SPSF3K_00194) rcrR 186435..186884 (+) 450 WP_004235125.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  SPSF3K_RS00940 (SPSF3K_00195) rcrP 186877..188586 (+) 1710 WP_004235128.1 ABC transporter ATP-binding protein Regulator
  SPSF3K_RS00945 (SPSF3K_00196) - 188586..190370 (+) 1785 WP_013794470.1 ABC transporter ATP-binding protein -
  SPSF3K_RS00950 (SPSF3K_00197) - 190420..191679 (-) 1260 WP_004235131.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17294.97 Da        Isoelectric Point: 6.9820

>NTDB_id=218915 SPSF3K_RS00935 WP_004235125.1 186435..186884(+) (rcrR) [Streptococcus parauberis strain SPOF3K]
MSRIIADLRDLTHQIEQITEEIAQAYHIDQLAGPQGHVLVFLERNQDREIFVKDIEKTLNISKSVSSNLVKRMEKNGFIE
VVPSIADKRFKQVVLTEVGKEKIPLLHECRKAIENYFFKEISKDDFMTVKHVIDQLKLNISEYKGEKNA

Nucleotide


Download         Length: 450 bp        

>NTDB_id=218915 SPSF3K_RS00935 WP_004235125.1 186435..186884(+) (rcrR) [Streptococcus parauberis strain SPOF3K]
ATGTCACGTATTATTGCTGATCTTCGTGATTTGACTCATCAAATTGAACAAATCACTGAAGAAATTGCGCAAGCTTACCA
TATTGACCAGTTAGCTGGGCCTCAAGGCCATGTACTTGTTTTCTTGGAAAGAAATCAGGACCGAGAAATCTTTGTTAAAG
ATATTGAAAAAACATTAAATATCTCAAAATCAGTTTCCAGTAATTTAGTTAAACGCATGGAAAAAAATGGTTTTATTGAA
GTAGTTCCTTCAATAGCAGATAAACGTTTTAAACAAGTAGTATTAACAGAGGTTGGAAAAGAAAAGATTCCTTTGTTGCA
TGAATGCCGGAAGGCTATCGAAAATTATTTTTTCAAGGAAATATCAAAAGATGACTTTATGACAGTCAAGCATGTCATAG
ACCAGCTAAAACTAAATATTTCTGAATACAAAGGAGAGAAAAATGCTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(32-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

42.857

93.96

0.403

Multiple sequence alignment