Detailed information NTG0218907

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: SPSF3K_RS00060
• Genome accession: NZ_CP025420
• Coordinates: 12043..13137 (-)
• Length: 364 a.a.
• NCBI ID: WP_003105355.1
• Uniprot ID: A0ABN0INW8
• Organism: Streptococcus parauberis strain SPOF3K
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 7043..18137

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SPSF3K_RS00045 (SPSF3K_00009)	-	7841..8713 (-)	873	WP_003104058.1	YitT family protein	-
SPSF3K_RS00050 (SPSF3K_00010)	trpS	9109..10131 (+)	1023	WP_003107950.1	tryptophan--tRNA ligase	-
SPSF3K_RS00055 (SPSF3K_00011)	guaB	10374..11855 (+)	1482	WP_003104758.1	IMP dehydrogenase	-
SPSF3K_RS00060 (SPSF3K_00012)	recF	12043..13137 (-)	1095	WP_003105355.1	DNA replication/repair protein RecF	Machinery gene
SPSF3K_RS00065 (SPSF3K_00013)	yaaA	13140..13544 (-)	405	WP_003103342.1	S4 domain-containing protein YaaA	-
SPSF3K_RS00070 (SPSF3K_00015)	yfmF	13921..15165 (+)	1245	WP_003108846.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
SPSF3K_RS00075 (SPSF3K_00016)	yfmH	15165..16445 (+)	1281	WP_003103837.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
SPSF3K_RS00080 (SPSF3K_00017)	-	16495..17472 (+)	978	WP_100190755.1	helix-turn-helix domain-containing protein	-
SPSF3K_RS00085 (SPSF3K_00018)	pgsA	17485..18027 (+)	543	WP_003105484.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 41839.84 Da
• Isoelectric Point: 7.6337

>NTDB_id=218907 SPSF3K_RS00060 WP_003105355.1 12043..13137(-) (recF) [Streptococcus parauberis strain SPOF3K]
MWLKELTLNHFRNYNDLNINFSEGLNIFIGNNAQGKTNILEAIYFIALTRSHRTRSDKELIQFSTDRLSIEGKLNRLSGN
ISLEINLSDKGRITKINSLKQAKLSEYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSDLSNYNHILKQR
NAYLKAARTIDFDFLVVLDQQLSYYGSRVIQQRIQFIADLEKEADAHHQAISNELESLQIKYISSIDTSQSQLIQEKFME
QLERNRQRDIFRKNTSIGPHRDDIEFYINNMNANFASQGQHRSLILSIKMAEVSLMKILTGDNPILLLDDVMSELDNTRQ
TKLIETVIQENVQTFITTTSLEHLSQLPKTLKTFHVTSGTIKAD

Nucleotide

• Length: 1095 bp

>NTDB_id=218907 SPSF3K_RS00060 WP_003105355.1 12043..13137(-) (recF) [Streptococcus parauberis strain SPOF3K]
ATGTGGTTAAAGGAATTAACACTAAATCACTTTAGAAATTATAATGACTTAAATATAAATTTTTCAGAGGGACTAAACAT
CTTTATAGGAAACAATGCCCAAGGAAAAACGAACATCTTAGAAGCTATCTATTTTATTGCCTTAACTAGAAGTCATCGCA
CAAGAAGTGATAAAGAATTAATCCAGTTTTCAACTGATCGTTTATCTATTGAAGGAAAATTAAATCGCCTCTCAGGTAAT
ATCAGTTTAGAAATTAATTTATCTGATAAAGGTCGAATAACAAAGATTAATTCATTAAAACAAGCAAAACTTTCTGAATA
TATAGGTACAATGATGGTAGTACTCTTTGCTCCTGAAGATTTACAATTAGTTAAAGGCGCTCCTAGTCTTCGAAGAAAGT
TTATTGATATTGATTTAGGTCAAATTAAACCTGTTTATCTATCTGACTTATCGAATTATAACCATATTTTAAAACAAAGA
AACGCATATTTAAAAGCTGCTAGAACAATTGATTTTGACTTTCTAGTAGTTTTGGATCAACAATTATCATATTATGGTAG
CCGTGTTATTCAGCAAAGAATTCAATTCATAGCTGATCTTGAAAAAGAAGCAGATGCTCATCATCAGGCAATATCAAATG
AACTAGAAAGTTTACAAATTAAATATATTTCTAGCATTGATACAAGTCAAAGTCAACTTATTCAAGAAAAATTCATGGAG
CAACTTGAAAGAAATCGTCAACGTGATATTTTTAGAAAGAATACGAGTATTGGCCCACATAGAGATGACATTGAATTTTA
TATAAATAATATGAATGCAAATTTTGCAAGCCAAGGTCAACATCGAAGCTTAATTTTATCCATAAAGATGGCTGAAGTGA
GTTTAATGAAAATCTTGACTGGAGATAATCCAATACTACTGTTAGATGATGTTATGAGTGAATTAGACAATACAAGACAA
ACAAAATTAATTGAGACTGTCATTCAAGAAAATGTTCAAACTTTTATTACTACTACTAGTTTGGAACACCTCTCGCAACT
TCCAAAAACTTTAAAAACTTTTCATGTAACTAGTGGAACCATTAAGGCAGACTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-360)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	61.281	98.626	0.604
recF	Bacillus subtilis subsp. subtilis str. 168	43.935	100	0.448