Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   CRH08_RS05440 Genome accession   NZ_CP025419
Coordinates   1043523..1044188 (-) Length   221 a.a.
NCBI ID   WP_009909826.1    Uniprot ID   -
Organism   Streptococcus suis strain SH0104     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1038523..1049188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRH08_RS05420 - 1039173..1039694 (+) 522 WP_002935005.1 AAA family ATPase -
  CRH08_RS05425 xerS 1039861..1040931 (+) 1071 WP_002935006.1 tyrosine recombinase XerS Machinery gene
  CRH08_RS05430 - 1041001..1042509 (-) 1509 WP_013730362.1 phosphoglucomutase -
  CRH08_RS05435 - 1042585..1043526 (-) 942 WP_002935009.1 sensor histidine kinase -
  CRH08_RS05440 braR 1043523..1044188 (-) 666 WP_009909826.1 response regulator transcription factor Regulator
  CRH08_RS05445 - 1044227..1044484 (-) 258 WP_002935012.1 type II toxin-antitoxin system RelE/ParE family toxin -
  CRH08_RS05450 - 1044474..1044713 (-) 240 WP_002935014.1 DUF6290 family protein -
  CRH08_RS05455 - 1044805..1046775 (-) 1971 WP_013730363.1 FtsX-like permease family protein -
  CRH08_RS05460 - 1046776..1047528 (-) 753 WP_002935019.1 ABC transporter ATP-binding protein -
  CRH08_RS05465 - 1047545..1047928 (-) 384 WP_002935021.1 NisI/SpaI family lantibiotic immunity lipoprotein -
  CRH08_RS11650 - 1047941..1048081 (-) 141 WP_002935023.1 hypothetical protein -
  CRH08_RS05475 - 1048180..1048914 (-) 735 WP_002935025.1 TraX family protein -
  CRH08_RS11655 - 1048927..1049064 (-) 138 WP_002935027.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25459.28 Da        Isoelectric Point: 4.7792

>NTDB_id=218858 CRH08_RS05440 WP_009909826.1 1043523..1044188(-) (braR) [Streptococcus suis strain SH0104]
MKKEKIYIVEDDEMIVQLLKQHLGKSYQVESVQNFRAVSQEVAEIKPDLVLMDISLPYYNGFYWTTEIRKTMTMPIIFIS
SSDDEMNAVMAMNMGGDDFVSKPFSLGILDAKIGAFLRRVNQFSKSTDLSIDQFQLSLDGRFSNELEQVQLSPTETKILS
ALLERQGQIVSKEELLEKLWENEEFIDQNTLNVNMTRLRKKVSEVGFERIHTVRGVGYLVK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=218858 CRH08_RS05440 WP_009909826.1 1043523..1044188(-) (braR) [Streptococcus suis strain SH0104]
ATGAAAAAAGAGAAGATTTATATTGTTGAAGATGATGAGATGATTGTCCAGCTCTTGAAGCAGCATTTGGGAAAATCGTA
TCAGGTGGAAAGTGTGCAGAATTTCCGAGCTGTCAGTCAGGAAGTCGCTGAAATCAAACCAGACTTGGTGCTGATGGACA
TTAGCCTGCCTTATTACAACGGTTTTTACTGGACGACAGAAATCCGTAAAACCATGACCATGCCCATTATCTTTATCTCC
TCTAGCGATGATGAGATGAATGCGGTCATGGCCATGAACATGGGTGGCGATGATTTTGTGTCTAAGCCGTTTTCTCTGGG
GATTTTGGATGCCAAAATCGGCGCCTTCTTGCGTCGGGTTAATCAATTCAGCAAATCAACTGATTTGTCAATTGACCAGT
TCCAACTTAGTTTAGACGGGCGATTTTCAAACGAATTGGAACAGGTTCAATTGTCTCCTACGGAAACCAAGATTTTGTCC
GCCTTACTAGAAAGACAAGGGCAGATTGTCAGCAAGGAAGAACTCCTGGAAAAACTCTGGGAAAATGAAGAATTTATTGA
CCAGAACACGCTCAATGTCAACATGACCAGACTGCGTAAGAAGGTGAGCGAAGTCGGGTTTGAACGAATTCATACGGTTC
GTGGCGTGGGGTACTTGGTCAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-219)

Response regulator receiver domain (Response_reg)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.273

99.548

0.471

Multiple sequence alignment