Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   CRH08_RS05425 Genome accession   NZ_CP025419
Coordinates   1039861..1040931 (+) Length   356 a.a.
NCBI ID   WP_002935006.1    Uniprot ID   -
Organism   Streptococcus suis strain SH0104     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1034861..1045931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRH08_RS05400 - 1035582..1035914 (+) 333 WP_002935001.1 putative DNA-binding protein -
  CRH08_RS05405 ffh 1035927..1037501 (+) 1575 WP_002935002.1 signal recognition particle protein -
  CRH08_RS05410 - 1037695..1038363 (+) 669 WP_002935003.1 SatD family protein -
  CRH08_RS05415 - 1038367..1039107 (+) 741 WP_009909823.1 DUF3307 domain-containing protein -
  CRH08_RS05420 - 1039173..1039694 (+) 522 WP_002935005.1 AAA family ATPase -
  CRH08_RS05425 xerS 1039861..1040931 (+) 1071 WP_002935006.1 tyrosine recombinase XerS Machinery gene
  CRH08_RS05430 - 1041001..1042509 (-) 1509 WP_013730362.1 phosphoglucomutase -
  CRH08_RS05435 - 1042585..1043526 (-) 942 WP_002935009.1 sensor histidine kinase -
  CRH08_RS05440 braR 1043523..1044188 (-) 666 WP_009909826.1 response regulator transcription factor Regulator
  CRH08_RS05445 - 1044227..1044484 (-) 258 WP_002935012.1 type II toxin-antitoxin system RelE/ParE family toxin -
  CRH08_RS05450 - 1044474..1044713 (-) 240 WP_002935014.1 DUF6290 family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41545.71 Da        Isoelectric Point: 9.2257

>NTDB_id=218857 CRH08_RS05425 WP_002935006.1 1039861..1040931(+) (xerS) [Streptococcus suis strain SH0104]
MRRELLLEKIDQLKEIMPWFVLEYYQSKLAVPYSFTTLYEYLKEYRRFFEWLQDSDLVSVERIADIPLDILEHLTKKDME
AFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLFKYLTEEVENEQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYVDKEYQVNLSKRALSSFQKNKERDLAILALLLASGVRLSEAVNLDLRDVNLNMMIIEVTRKGGKRDS
VNVAGFAKPYLEAYMSIRQQRYKAEKTDTAFFLSEYRGLPNRIDASSIEKMVAKYSADFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHANTQVTDLYTHIVNDEQKNALDQL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=218857 CRH08_RS05425 WP_002935006.1 1039861..1040931(+) (xerS) [Streptococcus suis strain SH0104]
ATGAGACGCGAGTTATTACTAGAAAAAATTGATCAACTAAAAGAAATTATGCCTTGGTTTGTTCTGGAATATTATCAGTC
AAAATTGGCTGTGCCTTACAGTTTTACTACCTTATATGAATACTTGAAAGAATACCGTCGATTCTTTGAGTGGTTACAGG
ATTCGGATTTGGTATCTGTGGAACGGATTGCTGACATTCCTTTGGATATTCTGGAACATTTGACAAAAAAAGATATGGAA
GCCTTTATTCTTTATCTGCGGGAGCGTCCCTTGCTGAACGCCAATACCACGCAGAATGGTGTGTCGCAGACCACCATTAA
CCGTACCCTGTCGGCTCTTTCTAGTCTCTTCAAGTATTTAACCGAAGAAGTGGAAAATGAGCAGGGCGAGCCCTACTTCT
ACCGCAATGTCATGAAAAAGGTATCTACCAAGAAGAAGAAGGAAACCTTGGCAGCGCGGGCTGAGAACATCAAGCAAAAG
CTCTTTTTGGGCGATGAAACTATGGAGTTCTTGGACTATGTGGACAAGGAATACCAAGTCAATCTCTCTAAACGTGCCCT
CTCCTCTTTCCAGAAAAATAAGGAGCGAGATTTGGCGATTCTGGCACTTCTCTTGGCTTCTGGCGTCCGTCTGTCAGAAG
CGGTGAATTTGGATCTTCGAGATGTAAATCTCAATATGATGATTATCGAAGTAACCCGTAAGGGTGGTAAGCGGGACTCG
GTCAATGTGGCTGGGTTTGCTAAGCCCTATCTGGAAGCCTATATGAGCATCCGTCAGCAACGCTACAAGGCTGAAAAAAC
GGATACGGCCTTCTTCCTGTCCGAATACCGTGGTCTACCCAATCGTATCGATGCTTCTTCTATTGAAAAAATGGTTGCCA
AGTACTCTGCGGACTTCAAGATACGCGTAACCCCCCACAAACTCCGTCATACCTTGGCAACTCGCCTATACGACGCCACA
AAGTCGCAAGTTCTGGTCAGTCATCAGCTGGGCCACGCCAATACTCAGGTCACTGACCTCTACACCCATATAGTCAATGA
TGAGCAAAAAAATGCACTGGATCAATTATAG

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(190-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

82.865

100

0.829

Multiple sequence alignment