Detailed information NTG0218831

Bioinformatically predicted

Overview

• Name: rpoN/rpoN1
• Type: Machinery gene
• Locus tag: B2B01_RS17260
• Genome accession: NZ_CP019929
• Coordinates: 3739510..3740931 (-)
• Length: 473 a.a.
• NCBI ID: WP_127815314.1
• Uniprot ID: -
• Organism: Bordetella avium strain 14-4061
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3734510..3745931

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B2B01_RS17235	-	3735132..3735761 (+)	630	WP_012418981.1	LysE family transporter	-
B2B01_RS17240	-	3735787..3737394 (+)	1608	WP_012418982.1	peptide chain release factor 3	-
B2B01_RS17245	-	3737431..3738096 (+)	666	WP_012418983.1	hypothetical protein	-
B2B01_RS17250	bfr	3738169..3738645 (-)	477	WP_012418984.1	bacterioferritin	-
B2B01_RS17255	-	3739153..3739449 (+)	297	WP_012418985.1	(2Fe-2S)-binding protein	-
B2B01_RS17260	rpoN/rpoN1	3739510..3740931 (-)	1422	WP_127815314.1	RNA polymerase factor sigma-54	Machinery gene
B2B01_RS17265	-	3740930..3741565 (+)	636	WP_012418987.1	hypothetical protein	-
B2B01_RS17270	leuA	3741922..3743631 (+)	1710	WP_012418988.1	2-isopropylmalate synthase	-
B2B01_RS17275	-	3743711..3745000 (-)	1290	WP_114852118.1	amidase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 52162.58 Da
• Isoelectric Point: 4.8038

>NTDB_id=218831 B2B01_RS17260 WP_127815314.1 3739510..3740931(-) (rpoN/rpoN1) [Bordetella avium strain 14-4061]
MQNIVPMTRPALELRPGQHLTLTPQLQQSIRLLQLSSLELEAEISLALADNPLLERDENPAEQVDSQREASIESDDSSPE
IETRLEEMPGSGGVYPDEDEPQQARADTLREHLLGQLALTRAGPRDAALVEVLIEELDDNGYLGSPLVEILQWLPPELEI
DEDELRVALSLLQSFDPPGIGAHDMADCLLLQLRQPDLTRLPEAANPVILRCAREICVQHLSLLASGNLARLRDVLGVDE
PTLRTAHSLIVRLEPRPGRAWTVPAAEYALPDVLVSKTRQGWQAVLNSAAMPRLQINGLYAQMLANQRETAYAGLSAQLQ
QARWMIRNIEQRFDTILRVSQAIVVHQAAFFSEGPAAMRPLILKDIAAELGLHESTISRATTQKYMLTPFGTLELKYFFG
TGLATDSGNAASATAVQAHIRKMVSEENRAKPLSDSQIMERLASQGIVIARRTVAKYREALRIAPAAVRKAQG

Nucleotide

• Length: 1422 bp

>NTDB_id=218831 B2B01_RS17260 WP_127815314.1 3739510..3740931(-) (rpoN/rpoN1) [Bordetella avium strain 14-4061]
ATGCAAAATATTGTACCTATGACTCGTCCTGCTCTAGAACTTCGGCCTGGTCAGCATTTAACTTTGACCCCGCAACTGCA
ACAGTCGATCCGGCTCTTGCAGCTATCCTCATTGGAGCTGGAGGCGGAAATCTCCCTGGCCTTGGCCGACAATCCGTTGC
TGGAGCGCGACGAAAATCCGGCCGAACAGGTGGACTCGCAGCGCGAGGCAAGCATCGAAAGTGATGATTCCTCACCTGAA
ATCGAGACGCGTCTGGAAGAAATGCCGGGTTCGGGCGGCGTCTATCCAGACGAAGATGAGCCGCAACAGGCCCGCGCCGA
CACGCTGCGTGAGCATTTGCTGGGCCAACTGGCGCTGACCCGCGCCGGGCCGCGCGACGCGGCATTGGTTGAGGTGCTCA
TCGAGGAGCTGGACGACAACGGCTATCTGGGCTCGCCGCTGGTGGAAATCTTGCAGTGGCTGCCGCCGGAGCTGGAGATC
GATGAAGACGAGTTGCGTGTCGCTTTGAGCCTGTTGCAGTCTTTCGACCCGCCGGGCATCGGCGCCCACGATATGGCGGA
CTGTCTGTTGCTGCAATTGCGCCAACCCGATCTGACTCGTTTGCCCGAAGCCGCCAACCCTGTCATCTTGCGTTGTGCGC
GCGAGATCTGCGTGCAGCATCTGTCCTTGCTGGCCTCAGGCAATTTGGCGCGCCTGCGTGACGTGCTGGGGGTGGACGAA
CCGACCTTGCGCACCGCCCACAGCCTTATCGTGCGCCTAGAGCCCCGACCCGGTCGGGCCTGGACCGTCCCGGCGGCCGA
GTATGCGCTGCCTGACGTGCTGGTGAGCAAAACGCGGCAGGGCTGGCAGGCCGTGCTCAATAGCGCCGCCATGCCCCGGC
TACAGATCAATGGGTTGTATGCGCAAATGTTGGCTAACCAGCGAGAAACGGCCTATGCGGGCCTGAGCGCACAGTTGCAG
CAGGCACGCTGGATGATCCGCAATATCGAACAACGATTCGACACGATTCTGCGCGTGTCGCAGGCCATTGTGGTGCATCA
GGCGGCGTTTTTCAGTGAAGGTCCGGCTGCCATGCGTCCGCTCATTCTCAAAGACATTGCAGCTGAGTTGGGTTTGCACG
AATCCACGATTTCACGCGCCACAACACAGAAGTACATGCTCACTCCGTTCGGTACGCTGGAGCTCAAATATTTCTTCGGG
ACCGGTCTTGCCACGGATAGCGGGAATGCGGCTTCTGCCACCGCTGTGCAGGCGCATATCCGCAAGATGGTGTCAGAGGA
AAACCGCGCCAAGCCGCTATCTGATAGCCAGATCATGGAGCGATTGGCCAGTCAGGGCATCGTGATTGCCCGGCGTACCG
TGGCCAAGTACCGGGAAGCCTTGCGCATTGCGCCGGCGGCGGTGCGTAAGGCGCAGGGCTGA

Domains

Predicted by InterproScan.

• Sigma-54, DNA binding domain (Sigma54_DBD) (315-470)

• Sigma-54 factor, core binding domain (Sigma54_CBD) (101-300)

• Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID) (12-55)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoN/rpoN1	Ralstonia pseudosolanacearum GMI1000	48.718	100	0.522