Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   CRH08_RS01275 Genome accession   NZ_CP025419
Coordinates   225193..227526 (+) Length   777 a.a.
NCBI ID   WP_002935942.1    Uniprot ID   -
Organism   Streptococcus suis strain SH0104     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 220193..232526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRH08_RS01250 treP 220788..222782 (-) 1995 WP_002935953.1 PTS system trehalose-specific EIIBC component -
  CRH08_RS01255 treR 223015..223728 (+) 714 WP_012774930.1 trehalose operon repressor Regulator
  CRH08_RS01260 - 223786..224097 (+) 312 WP_002935948.1 hypothetical protein -
  CRH08_RS01265 - 224094..224642 (+) 549 WP_002935945.1 CvpA family protein -
  CRH08_RS01275 mutS/mutS2 225193..227526 (+) 2334 WP_002935942.1 endonuclease MutS2 Machinery gene
  CRH08_RS01280 - 227692..228084 (+) 393 WP_014636774.1 DUF1310 family protein -
  CRH08_RS01285 - 228077..228340 (+) 264 WP_022540536.1 hypothetical protein -
  CRH08_RS01290 - 228366..228743 (+) 378 WP_002935940.1 DUF1310 family protein -
  CRH08_RS01295 - 228790..229047 (+) 258 WP_002935939.1 hypothetical protein -
  CRH08_RS01300 - 229142..229531 (+) 390 WP_002935938.1 DUF1310 family protein -
  CRH08_RS01305 - 229524..230774 (+) 1251 WP_002935930.1 Mbeg1-like protein -
  CRH08_RS01310 - 230876..231253 (+) 378 WP_024390453.1 DUF1310 family protein -
  CRH08_RS01315 - 231256..231558 (+) 303 WP_029694155.1 hypothetical protein -
  CRH08_RS01320 - 231653..232033 (+) 381 WP_002935927.1 DUF1310 family protein -

Sequence

Protein


Download         Length: 777 a.a.        Molecular weight: 87573.28 Da        Isoelectric Point: 6.6127

>NTDB_id=218832 CRH08_RS01275 WP_002935942.1 225193..227526(+) (mutS/mutS2) [Streptococcus suis strain SH0104]
MNNKIIETLEFHKVRQKIEPYLLTEQGFEELRQLEPMVEVQRIQQAFDELTDIAQIFVENPYFSLSATSDIGPAMRRLEL
DTDLNIAELLAVKKVLEVSKSLLDFYGNLENVSLSQLDKLFEKIELFPHLQGSLQSINDAGFVEDFASEKLARIRRKIRE
AEDQVRQVMQDILKTKGDMLSDSILASRNGRNVLPVKNTYRNKIAGVVHDISASGSTVYIEPRAVVTLNEEISHLRAEER
HELNRILQELSDMLRPHSGVIRNNAWLIGHIDFVRAKHLFAREHQAVVPKLSEKQDIALLNVRHPLIAKPVPNDLYFGSQ
LTAIVITGPNTGGKTIMLKTLGLTHLMAQSGLPILADKGSRVAIFKEIFADIGDEQSIEQSLSTFSSHMTHTVQILAEAD
QDSLILFDELGAGTDPQEGASLAMAILDDLRLRGIKTMATTHYPELKAYGIETSGIENASMEFDTNSLRPTYKFMQGVPG
RSNAFEIARRLGLSDIIIQSAQSWTDTDSDVNRIIEKLESQTVESRQRLDKIRDVEQENYKMNRALRKLYDELNRERENE
LNKARLEAKEIVDMALAESEDILKNLHAAASLKPHQIIEAKAELKKLAPEVVDLSKNKVLKKAKIQREAKVGDDIIVTAY
GQRGTLTNQLKDGRWEAQVGLIKMTLAKDEFELVKAEKAEQPKKRQVHTVKRANVRGPKARLDLRGKRYEEAMMELDEFI
DQALLNNLAQVDIVHGIGTGVIREGVTKYLRRNKQVKEFGYAPQNAGGSGCTIVTFK

Nucleotide


Download         Length: 2334 bp        

>NTDB_id=218832 CRH08_RS01275 WP_002935942.1 225193..227526(+) (mutS/mutS2) [Streptococcus suis strain SH0104]
ATGAATAATAAAATTATTGAAACCCTTGAATTTCACAAGGTAAGACAAAAAATTGAGCCCTATCTCTTGACGGAACAGGG
CTTTGAAGAATTACGACAGTTGGAGCCCATGGTGGAAGTCCAACGTATCCAACAGGCCTTCGACGAGTTGACAGACATAG
CGCAGATTTTTGTGGAAAATCCCTATTTCAGTCTGTCAGCTACTAGTGACATTGGTCCAGCCATGCGTCGTTTGGAATTG
GATACAGACCTCAATATCGCTGAATTATTAGCTGTTAAAAAGGTCTTGGAAGTTTCTAAATCTCTCTTGGATTTTTATGG
AAATCTGGAAAATGTCAGTCTTAGCCAGCTGGATAAACTCTTTGAGAAGATTGAGCTTTTTCCACATTTACAGGGCTCCC
TCCAGTCCATCAATGATGCTGGTTTTGTAGAGGATTTTGCCTCAGAAAAGCTGGCTCGTATTAGAAGAAAAATCCGTGAA
GCTGAAGATCAAGTTCGTCAGGTCATGCAGGATATTTTGAAGACCAAGGGCGACATGCTGTCCGATAGTATTTTGGCAAG
CCGTAATGGACGCAATGTCCTTCCTGTTAAAAATACCTATCGCAATAAGATTGCGGGTGTAGTCCATGATATCTCCGCTT
CTGGCTCGACGGTTTATATTGAGCCGCGGGCAGTGGTGACCTTGAACGAAGAAATCAGTCACCTACGTGCAGAAGAACGC
CATGAGCTCAACCGTATCCTGCAGGAATTATCGGATATGCTCCGTCCGCATAGTGGTGTGATCCGTAACAATGCCTGGCT
TATCGGGCATATTGATTTCGTCCGTGCTAAGCATCTCTTTGCACGTGAACATCAAGCAGTTGTACCCAAACTATCTGAGA
AGCAGGATATTGCTCTTCTCAACGTTCGACATCCGCTCATTGCTAAGCCTGTACCAAATGACCTTTATTTCGGTAGTCAG
TTGACGGCTATCGTGATAACAGGTCCCAACACAGGTGGTAAGACCATCATGCTTAAGACCTTGGGATTGACCCATCTGAT
GGCCCAGTCTGGTTTGCCTATCTTGGCTGACAAGGGCAGTCGGGTAGCTATCTTCAAAGAAATTTTTGCGGACATTGGAG
ACGAACAGTCCATCGAGCAGAGTTTATCGACCTTCTCCAGTCACATGACCCACACGGTACAGATTTTGGCGGAGGCGGAT
CAAGATTCCCTCATTCTATTTGATGAGTTGGGAGCTGGGACAGATCCGCAGGAGGGTGCGTCCTTGGCAATGGCTATTTT
GGATGACCTTCGTCTGCGGGGGATCAAGACCATGGCGACCACCCACTACCCTGAGCTTAAGGCCTACGGGATAGAAACCT
CTGGTATTGAAAATGCCAGCATGGAGTTTGATACCAATAGCCTGCGTCCGACCTATAAGTTTATGCAGGGTGTTCCTGGT
CGCTCCAATGCCTTTGAAATTGCTCGCCGTCTTGGTCTATCTGATATTATTATCCAGTCAGCCCAATCTTGGACGGATAC
AGATAGCGATGTGAACCGCATTATCGAGAAATTGGAAAGTCAGACGGTTGAAAGTCGTCAGCGTCTGGATAAGATTCGTG
ATGTGGAGCAAGAAAATTACAAGATGAACCGAGCCCTCCGCAAGCTCTATGACGAGCTCAATCGTGAGAGGGAAAATGAG
CTCAACAAGGCACGCTTGGAAGCCAAGGAAATTGTAGATATGGCATTGGCAGAAAGCGAGGATATTCTCAAAAATCTCCA
TGCTGCAGCTAGTCTTAAGCCCCACCAGATTATCGAAGCCAAGGCAGAGCTGAAAAAGTTGGCGCCTGAAGTGGTGGATC
TGTCTAAAAACAAGGTTCTGAAGAAAGCTAAAATTCAGAGGGAAGCCAAGGTGGGCGATGACATTATCGTTACAGCTTAT
GGACAACGCGGGACCTTGACCAATCAGCTCAAGGACGGGCGTTGGGAAGCTCAGGTTGGCTTGATTAAGATGACCTTGGC
CAAAGATGAGTTTGAGTTAGTCAAGGCGGAGAAGGCAGAGCAGCCTAAGAAACGCCAGGTTCACACAGTCAAACGTGCCA
ATGTACGAGGACCAAAAGCCCGCTTAGATCTCCGTGGCAAACGCTACGAAGAGGCTATGATGGAGCTGGATGAATTTATC
GATCAGGCCCTTCTCAATAACCTAGCCCAAGTCGATATTGTCCACGGTATAGGTACAGGTGTCATCCGAGAAGGGGTGAC
CAAGTACCTACGCCGAAACAAGCAGGTCAAGGAGTTCGGCTATGCCCCACAAAATGCAGGTGGATCAGGCTGTACTATTG
TGACGTTTAAATAA

Domains

Predicted by InterProScan.

Smr domain (Smr)

(702-777)

MutS domain V (MutS_V)

(324-504)

MutS2 and Smr-associated SH3 domain (MSSS)

(631-670)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

39.646

100

0.404

Multiple sequence alignment