Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CXR04_RS16230 Genome accession   NZ_CP025407
Coordinates   3767086..3768540 (+) Length   484 a.a.
NCBI ID   WP_101423056.1    Uniprot ID   -
Organism   Streptomyces sp. CMB-StM0423     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3762086..3773540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXR04_RS16210 (CXR04_16210) - 3762448..3763662 (-) 1215 WP_101423048.1 MFS transporter -
  CXR04_RS16215 (CXR04_16215) - 3763778..3764377 (+) 600 WP_101423050.1 TetR/AcrR family transcriptional regulator -
  CXR04_RS16220 (CXR04_16220) - 3764409..3764912 (-) 504 WP_101423052.1 hypothetical protein -
  CXR04_RS16225 (CXR04_16225) ilvD 3765072..3766925 (-) 1854 WP_101423054.1 dihydroxy-acid dehydratase -
  CXR04_RS16230 (CXR04_16230) radA 3767086..3768540 (+) 1455 WP_101423056.1 DNA repair protein RadA Machinery gene
  CXR04_RS16235 (CXR04_16235) disA 3768651..3769775 (+) 1125 WP_101423058.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  CXR04_RS16240 (CXR04_16240) - 3769970..3770854 (-) 885 WP_101423060.1 hypothetical protein -
  CXR04_RS16245 (CXR04_16245) - 3770982..3771560 (+) 579 WP_101423062.1 phosphatase PAP2 family protein -
  CXR04_RS16250 (CXR04_16250) - 3771634..3773487 (+) 1854 WP_101423064.1 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 50720.11 Da        Isoelectric Point: 7.9792

>NTDB_id=218760 CXR04_RS16230 WP_101423056.1 3767086..3768540(+) (radA) [Streptomyces sp. CMB-StM0423]
MASRKSGGRDRPAYRCAECGWSTVKWLGRCPECQAWGTIEEVGAPAVRTTAAGRVTTAALPIAQVDARRVEARSTGVPEL
DRVLGGGLVPGAVVLMAGEPGVGKSTLLLDVAAKAAVGSERTLYVTGEESAGQVRLRADRIGALSDGLYLAAETDLAAVL
AHLDEVKPALLVLDSVQTVASGEIDGAPGGMAQVREVAGALIRASKERGMATILVGHVTKDGAIAGPRLLEHLVDVVLHI
EGDRHARLRLVRGMKNRYGATDEVGCFELHDEGIIGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGDIRALSKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVARRLAEAARLGFTQALVPADPGKIPTGMKVREVADIGDALRALPAGRRRTGGGAREPAGEREPRESRQPE
EARR

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=218760 CXR04_RS16230 WP_101423056.1 3767086..3768540(+) (radA) [Streptomyces sp. CMB-StM0423]
ATGGCTTCCCGAAAGAGCGGCGGCAGGGACCGCCCCGCGTACCGCTGCGCCGAGTGCGGCTGGTCCACCGTGAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGCACGATCGAGGAGGTCGGCGCGCCCGCGGTCAGGACCACGGCCGCCGGCC
GGGTCACGACGGCGGCGCTGCCCATCGCGCAGGTCGACGCCCGCCGTGTCGAGGCCCGCTCGACGGGCGTGCCGGAGCTG
GACCGGGTGCTCGGCGGCGGGCTCGTGCCCGGCGCGGTGGTGCTGATGGCCGGCGAGCCCGGGGTGGGGAAGTCGACGCT
GCTGCTCGACGTCGCCGCGAAGGCCGCGGTCGGCAGCGAGCGCACGCTGTACGTGACGGGAGAGGAGTCCGCCGGCCAGG
TCCGGCTGCGGGCCGACCGGATCGGGGCGCTGAGCGACGGGCTGTATCTGGCCGCCGAGACCGACCTCGCCGCCGTCCTC
GCGCACCTCGACGAGGTCAAGCCCGCCCTGCTGGTGCTGGACTCCGTGCAGACCGTCGCCTCCGGCGAGATCGACGGCGC
CCCCGGCGGCATGGCCCAGGTCCGGGAGGTCGCGGGTGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGGCCACGATCC
TCGTCGGCCACGTGACGAAGGACGGCGCCATCGCCGGCCCCCGCCTGCTGGAGCACCTGGTGGACGTCGTGCTGCACATC
GAGGGCGACCGGCACGCCCGGCTGCGGCTGGTCCGCGGCATGAAGAACAGGTACGGCGCGACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCATCGGCCTCGCCGACCCCAGCGGCCTGTTCCTGACCCGCCGGGACGAGCCCGTGCCCG
GCACCTGCCTGACGGTGACCCTGGAGGGCCGCAGGCCGCTGGTCGCGGAGGTGCAGGCGCTCACCGTCGACTCGCAGATC
CCCTCCCCCCGGCGCACCACGTCCGGTCTTGAGACCTCCCGGGTCTCGATGATGCTCGCCGTGCTGGAGCAGCGCGGCGA
CATCCGCGCGCTGTCCAAGCGGGACATCTACAGCGCCACCGTCGGCGGGGTGAAGCTCTCCGAGCCGGCCGCCGACCTGG
CCGTCGCGCTCGCGCTGGCCAGCGCCGCCAGCGACACCCCGCTGCCGAAGAACCTGGTCGCGATCGGCGAGGTGGGCCTC
GCCGGCGAGGTGCGGCGGGTGACCGGGGTGGCCAGGCGGCTGGCGGAGGCGGCCCGGCTCGGGTTCACGCAGGCACTCGT
ACCGGCGGATCCGGGCAAGATCCCCACAGGCATGAAAGTCCGGGAAGTCGCGGACATAGGGGACGCGTTGCGCGCGCTGC
CGGCCGGCCGGCGGCGCACCGGCGGGGGGGCCCGGGAGCCGGCCGGAGAAAGGGAGCCGAGGGAGTCCCGGCAGCCCGAG
GAGGCGCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(76-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae TIGR4

42.952

93.802

0.403
  radA Streptococcus pneumoniae D39

42.952

93.802

0.403
  radA Streptococcus pneumoniae R6

42.952

93.802

0.403
  radA Streptococcus pneumoniae Rx1

42.952

93.802

0.403
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.142

93.388

0.403
  radA Streptococcus mitis SK321

44.366

88.017

0.39
  radA Streptococcus mitis NCTC 12261

44.131

88.017

0.388