Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   B1200_RS15470 Genome accession   NZ_CP019903
Coordinates   2980796..2981425 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MDR_56     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2975796..2986425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1200_RS15445 (B1200_15915) ycbZ 2976197..2977957 (-) 1761 WP_000156476.1 Lon protease family protein -
  B1200_RS15450 (B1200_15920) matP 2978143..2978595 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  B1200_RS15455 (B1200_15925) ompA 2978671..2979711 (-) 1041 WP_032284986.1 porin OmpA -
  B1200_RS15465 (B1200_15935) sulA 2980068..2980577 (-) 510 WP_000288705.1 SOS-induced cell division inhibitor SulA -
  B1200_RS15470 (B1200_15940) sxy/tfoX 2980796..2981425 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  B1200_RS15475 (B1200_15945) yccS 2981388..2983550 (-) 2163 WP_000875041.1 YccS family putative transporter -
  B1200_RS15480 (B1200_15950) yccF 2983560..2984006 (-) 447 WP_001261236.1 YccF domain-containing protein -
  B1200_RS15485 (B1200_15955) helD 2984129..2986183 (+) 2055 WP_078081008.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=218761 B1200_RS15470 WP_000839153.1 2980796..2981425(+) (sxy/tfoX) [Escherichia coli strain MDR_56]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=218761 B1200_RS15470 WP_000839153.1 2980796..2981425(+) (sxy/tfoX) [Escherichia coli strain MDR_56]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment