Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   CXR04_RS15915 Genome accession   NZ_CP025407
Coordinates   3702203..3702877 (-) Length   224 a.a.
NCBI ID   WP_101422959.1    Uniprot ID   -
Organism   Streptomyces sp. CMB-StM0423     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3697203..3707877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXR04_RS15895 (CXR04_15895) panC 3697422..3698372 (-) 951 WP_199850469.1 pantoate--beta-alanine ligase -
  CXR04_RS15900 (CXR04_15900) - 3698385..3699293 (-) 909 WP_101422953.1 DUF2520 domain-containing protein -
  CXR04_RS15905 (CXR04_15905) - 3699532..3700791 (+) 1260 WP_101422955.1 beta-eliminating lyase-related protein -
  CXR04_RS15910 (CXR04_15910) - 3700898..3701986 (+) 1089 WP_101422957.1 DUF5937 family protein -
  CXR04_RS15915 (CXR04_15915) vraR 3702203..3702877 (-) 675 WP_101422959.1 response regulator transcription factor Regulator
  CXR04_RS15920 (CXR04_15920) - 3702983..3704212 (-) 1230 WP_101426400.1 sensor histidine kinase -
  CXR04_RS15925 (CXR04_15925) - 3704451..3705551 (+) 1101 WP_234380769.1 SAM-dependent methyltransferase -
  CXR04_RS15935 (CXR04_15935) - 3705668..3706831 (-) 1164 WP_101422961.1 betaine/proline/choline family ABC transporter ATP-binding protein -
  CXR04_RS15940 (CXR04_15940) - 3706916..3707650 (+) 735 WP_101422963.1 ABC transporter permease -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24043.98 Da        Isoelectric Point: 5.3710

>NTDB_id=218759 CXR04_RS15915 WP_101422959.1 3702203..3702877(-) (vraR) [Streptomyces sp. CMB-StM0423]
MTIRVMLVDDQALLRTGFRMVLAAQPDMDVVAEAGDGDEAVQLLAVTKVDVVLMDVRMPRLDGVGATRRICADKPAEAPP
KVLILTTFDLDEYAFSALQAGASGFMLKDVPPGDLLSAIRAVHSGDAVVAPSTTRRLIDRFTAVMPAPAGERAHPELKRL
TDREREVLLLIAQGLSNGEIAAQLVLSEATVKTHVGRILTKLELRDRVQAVVLAYETGLVRAGG

Nucleotide


Download         Length: 675 bp        

>NTDB_id=218759 CXR04_RS15915 WP_101422959.1 3702203..3702877(-) (vraR) [Streptomyces sp. CMB-StM0423]
GTGACGATCCGGGTCATGCTCGTGGACGACCAGGCGCTGCTGCGCACCGGCTTCCGGATGGTGCTGGCGGCCCAGCCCGA
CATGGACGTCGTCGCGGAGGCCGGGGACGGTGACGAGGCGGTGCAGCTCCTCGCCGTCACGAAGGTGGACGTCGTGCTCA
TGGACGTACGCATGCCGCGCCTCGACGGCGTCGGGGCGACGCGGCGCATCTGCGCGGACAAGCCGGCGGAGGCGCCGCCG
AAGGTGCTGATCCTGACCACCTTCGACCTCGACGAGTACGCCTTCTCCGCGCTGCAGGCGGGGGCGTCGGGCTTCATGCT
CAAGGACGTGCCGCCCGGCGACCTGCTGAGCGCCATCCGGGCCGTGCACAGCGGCGACGCGGTCGTCGCCCCGAGCACGA
CGCGGCGGCTCATCGACCGGTTCACGGCCGTGATGCCCGCGCCGGCGGGGGAGCGGGCGCACCCGGAGCTGAAGCGGCTG
ACGGACCGGGAGCGCGAGGTGCTGCTGCTGATCGCGCAGGGGCTGTCGAACGGGGAGATCGCGGCGCAACTGGTGCTGTC
GGAGGCGACGGTGAAGACACATGTGGGGCGGATCCTCACGAAGTTGGAGCTGCGGGACAGGGTGCAGGCGGTGGTCCTGG
CATACGAGACGGGTCTGGTACGGGCCGGAGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-120)

Bacterial regulatory proteins, luxR family (GerE)

(160-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.64

99.107

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

38.053

100

0.384