Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   MS8345_RS17325 Genome accession   NZ_CP025401
Coordinates   3306684..3307160 (+) Length   158 a.a.
NCBI ID   WP_001186715.1    Uniprot ID   A0ABR6U2I4
Organism   Escherichia coli strain MS8345     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3301684..3312160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MS8345_RS17285 (MS8345_03223) - 3302369..3303253 (+) 885 WP_000010402.1 GTPase -
  MS8345_RS17290 (MS8345_03224) - 3303456..3304136 (+) 681 Protein_3225 WYL domain-containing protein -
  MS8345_RS17295 (MS8345_03226) - 3304284..3304961 (+) 678 WP_001097369.1 hypothetical protein -
  MS8345_RS17300 (MS8345_03227) - 3304967..3305200 (+) 234 WP_001278282.1 DUF905 family protein -
  MS8345_RS17310 (MS8345_03229) - 3305290..3306106 (+) 817 Protein_3228 DUF932 domain-containing protein -
  MS8345_RS17315 (MS8345_03230) - 3306183..3306668 (+) 486 WP_000213705.1 antirestriction protein -
  MS8345_RS17325 (MS8345_03231) radC 3306684..3307160 (+) 477 WP_001186715.1 RadC family protein Machinery gene
  MS8345_RS17330 (MS8345_03232) - 3307229..3307450 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  MS8345_RS17335 (MS8345_03233) - 3307469..3308113 (+) 645 WP_000086770.1 hypothetical protein -
  MS8345_RS17340 (MS8345_03234) - 3308163..3308531 (+) 369 WP_001285113.1 type IV toxin-antitoxin system YeeU family antitoxin -
  MS8345_RS17345 (MS8345_03235) - 3308621..3308998 (+) 378 WP_023180999.1 TA system toxin CbtA family protein -
  MS8345_RS17350 (MS8345_03236) - 3308995..3309483 (+) 489 WP_000761678.1 DUF5983 family protein -
  MS8345_RS17355 (MS8345_03237) - 3309495..3309692 (+) 198 WP_000839240.1 DUF957 domain-containing protein -
  MS8345_RS17360 (MS8345_03238) - 3309777..3310642 (+) 866 Protein_3237 DUF4942 domain-containing protein -
  MS8345_RS17365 (MS8345_03240) - 3310714..3310977 (+) 264 WP_001143297.1 type II toxin-antitoxin system ParD family antitoxin -
  MS8345_RS17370 (MS8345_03241) - 3310974..3311300 (+) 327 WP_000779483.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17682.33 Da        Isoelectric Point: 6.9859

>NTDB_id=218673 MS8345_RS17325 WP_001186715.1 3306684..3307160(+) (radC) [Escherichia coli strain MS8345]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVILAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=218673 MS8345_RS17325 WP_001186715.1 3306684..3307160(+) (radC) [Escherichia coli strain MS8345]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTACTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGTGCCCTGTACCACAATGCCGCTGCCGTGATACTGGCACA
CAACCACCCGTCCGGTGAAGTCACTCCCAGTAAGGCAGATCGCCTTATCACGGAACGCCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment