Detailed information NTG0218652

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: XJ28_RS04575
• Genome accession: NZ_CP019871
• Coordinates: 886619..887959 (-)
• Length: 446 a.a.
• NCBI ID: WP_007246759.1
• Uniprot ID: A0AB38EKK0
• Organism: Pseudomonas syringae pv. tomato strain B13-200
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 881619..892959

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
XJ28_RS04560 (XJ28_04530)	-	884499..885614 (-)	1116	WP_007246760.1	efflux RND transporter periplasmic adaptor subunit	-
XJ28_RS04565 (XJ28_04535)	-	885696..886313 (-)	618	WP_005769275.1	TetR/AcrR family transcriptional regulator	-
XJ28_RS04575 (XJ28_04545)	pilR	886619..887959 (-)	1341	WP_007246759.1	sigma-54-dependent transcriptional regulator	Regulator
XJ28_RS04580 (XJ28_04550)	pilS	887962..889557 (-)	1596	WP_007246758.1	sensor histidine kinase	Regulator
XJ28_RS04585 (XJ28_04555)	-	889547..889786 (-)	240	WP_057403016.1	PP0621 family protein	-
XJ28_RS04590 (XJ28_04560)	-	889920..890942 (-)	1023	WP_005769279.1	outer membrane protein assembly factor BamD	-
XJ28_RS04595 (XJ28_04565)	rluD	891092..892054 (+)	963	WP_003381266.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
XJ28_RS04600 (XJ28_04570)	pgeF	892051..892779 (+)	729	WP_007246755.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49943.93 Da
• Isoelectric Point: 6.5611

>NTDB_id=218652 XJ28_RS04575 WP_007246759.1 886619..887959(-) (pilR) [Pseudomonas syringae pv. tomato strain B13-200]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAIHALKAGAFDFVTKPVDLNRLRELVNSALSLPSATQPVHSIDSRLLGDSPPMRTLRNQIGKLARSQAPI
YISGESGSGKELVARLIHEQGPRIDKPFVPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHNGTLFLDEVADL
PLAMQVKLLRAIQEKSIRSVGGQQEQVVDVRILCATHKDLNIEVAAGRFRQDLYYRLNVIELRVPSLRERREDIDQLAAS
VLRRLAGNGAQPVARLHAHALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLAESASPQAQQGANLADIDNLE
DYLESIERTLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=218652 XJ28_RS04575 WP_007246759.1 886619..887959(-) (pilR) [Pseudomonas syringae pv. tomato strain B13-200]
ATGAGCCAACGGCAAAAGATCCTGATAGTCGATGATGAGCCGGATATTCGCGAACTCCTGGAGATCACCCTCGGGCGCAT
GAAGCTCGACACGCGCAGCGCCCGCAACGTTGCCGAGGCCCATGACTGGCTGGCCCGCGAGCCGTTCGATATGTGCCTGA
CCGACATGCGCCTGCCCGATGGCAACGGCCTGGAACTGGTGCAGCACATCCAGCACGGCTACCCTCATGTGCCGGTGGCG
ATGATCACCGCCCACGGCAACCTGGACACGGCGATTCATGCGTTAAAAGCCGGGGCCTTCGATTTCGTGACCAAACCGGT
GGACCTCAACCGGCTCCGCGAACTGGTCAATAGTGCTCTGAGCCTGCCCTCCGCCACTCAACCGGTGCACAGCATCGACA
GCCGTCTGCTGGGTGATTCGCCGCCGATGCGCACCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCACCCATC
TACATCAGCGGCGAATCGGGCAGTGGCAAAGAGCTGGTAGCCCGGCTGATTCACGAGCAAGGGCCGCGCATCGACAAACC
GTTCGTGCCGGTCAACTGCGGGGCTATCCCTTCCGAATTGATGGAGAGCGAATTCTTCGGCCATCGCAAAGGCAGCTTCA
GCGGTGCCCACGAAGACAAGCCAGGGTTGTTTCAGGCGGCGCACAACGGCACGCTGTTTCTTGATGAGGTCGCTGATCTG
CCGCTGGCCATGCAGGTAAAACTGCTGCGCGCAATCCAGGAAAAGTCCATCCGCAGCGTCGGCGGTCAGCAGGAGCAGGT
CGTTGACGTGCGCATTCTATGCGCCACCCACAAGGACCTGAATATCGAAGTCGCTGCAGGTCGTTTCCGTCAGGACCTGT
ATTACCGACTGAACGTGATCGAACTGCGCGTACCTTCACTGCGCGAGCGGCGTGAGGATATCGATCAGTTGGCAGCCAGT
GTTTTGCGACGACTTGCCGGCAACGGCGCTCAGCCCGTCGCGCGCCTGCATGCGCATGCACTGGAAACGCTAAAAAGTTA
TCGATTCCCCGGGAACGTGCGCGAACTGGAAAACATGCTGGAACGCGCTTACACCCTCTGTGAAAACGATGAGATCCACG
CCAGCGACCTGCGTCTGGCAGAGTCCGCCAGCCCCCAGGCACAACAGGGTGCGAACCTGGCTGATATCGATAACCTGGAA
GACTACCTGGAAAGCATCGAACGCACACTCATCCTCCAGGCGCTGGAAGAAACCCGCTGGAACCGCACCGCAGCGGCCGA
GCGGCTCAGTTTGTCATTCAGATCGTTGCGTTACCGGTTGAAGAAGCTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	78.104	99.327	0.776
pilR	Acinetobacter baumannii strain A118	48.491	100	0.504