Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   CR922_RS09625 Genome accession   NZ_CP025400
Coordinates   1798486..1799586 (+) Length   366 a.a.
NCBI ID   WP_002947786.1    Uniprot ID   Q5LXI7
Organism   Streptococcus thermophilus strain EPS     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1793486..1804586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR922_RS09600 pgsA 1794028..1794570 (-) 543 WP_011227624.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CR922_RS09605 - 1794583..1795440 (-) 858 WP_011226703.1 helix-turn-helix domain-containing protein -
  CR922_RS09610 yfmH 1795499..1796776 (-) 1278 WP_011227625.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  CR922_RS09615 yfmF 1796778..1798028 (-) 1251 WP_011681762.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  CR922_RS09620 yaaA 1798106..1798483 (+) 378 WP_002947785.1 S4 domain-containing protein YaaA -
  CR922_RS09625 recF 1798486..1799586 (+) 1101 WP_002947786.1 DNA replication/repair protein RecF Machinery gene
  CR922_RS09630 guaB 1799755..1801236 (-) 1482 WP_011227627.1 IMP dehydrogenase -
  CR922_RS09635 trpS 1801413..1802435 (-) 1023 WP_002952292.1 tryptophan--tRNA ligase -
  CR922_RS09640 - 1802863..1803735 (+) 873 WP_011227628.1 YitT family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 42173.29 Da        Isoelectric Point: 8.3913

>NTDB_id=218628 CR922_RS09625 WP_002947786.1 1798486..1799586(+) (recF) [Streptococcus thermophilus strain EPS]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=218628 CR922_RS09625 WP_002947786.1 1798486..1799586(+) (recF) [Streptococcus thermophilus strain EPS]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCACCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACGGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACTACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5LXI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

65.642

97.814

0.642
  recF Bacillus subtilis subsp. subtilis str. 168

42.935

100

0.432