Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   CR921_RS09700 Genome accession   NZ_CP025399
Coordinates   1843650..1844750 (+) Length   366 a.a.
NCBI ID   WP_024704278.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain GABA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1838650..1849750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR921_RS09675 pgsA 1839191..1839733 (-) 543 WP_024704275.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CR921_RS09680 - 1839746..1840603 (-) 858 WP_011681760.1 helix-turn-helix domain-containing protein -
  CR921_RS09685 yfmH 1840662..1841939 (-) 1278 WP_024704276.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  CR921_RS09690 yfmF 1841941..1843191 (-) 1251 WP_024704277.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  CR921_RS09695 yaaA 1843270..1843647 (+) 378 WP_101415717.1 S4 domain-containing protein YaaA -
  CR921_RS09700 recF 1843650..1844750 (+) 1101 WP_024704278.1 DNA replication/repair protein RecF Machinery gene
  CR921_RS09705 guaB 1844919..1846400 (-) 1482 WP_011227627.1 IMP dehydrogenase -
  CR921_RS09710 trpS 1846577..1847599 (-) 1023 WP_011681763.1 tryptophan--tRNA ligase -
  CR921_RS09715 - 1848027..1848899 (+) 873 WP_011681764.1 YitT family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 42172.35 Da        Isoelectric Point: 9.2442

>NTDB_id=218528 CR921_RS09700 WP_024704278.1 1843650..1844750(+) (recF) [Streptococcus thermophilus strain GABA]
MWLKKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=218528 CR921_RS09700 WP_024704278.1 1843650..1844750(+) (recF) [Streptococcus thermophilus strain GABA]
ATGTGGCTTAAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCATCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACAGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACGACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

65.642

97.814

0.642
  recF Bacillus subtilis subsp. subtilis str. 168

42.935

100

0.432