Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | B1R45_RS04200 | Genome accession | NZ_CP019856 |
| Coordinates | 919563..920429 (-) | Length | 288 a.a. |
| NCBI ID | WP_078046825.1 | Uniprot ID | - |
| Organism | Pseudomonas azotoformans strain F77 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 914563..925429
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B1R45_RS04160 (B1R45_04155) | - | 914984..916282 (-) | 1299 | WP_078046821.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| B1R45_RS04165 (B1R45_04160) | - | 916343..916516 (-) | 174 | WP_016976295.1 | DUF3094 family protein | - |
| B1R45_RS04170 (B1R45_04165) | - | 916571..917200 (-) | 630 | WP_010213242.1 | DUF1780 domain-containing protein | - |
| B1R45_RS04175 (B1R45_04170) | - | 917304..917771 (+) | 468 | WP_078046822.1 | FAD/FMN-containing dehydrogenase | - |
| B1R45_RS04180 (B1R45_04175) | - | 917768..918457 (+) | 690 | WP_078046823.1 | energy-coupling factor ABC transporter permease | - |
| B1R45_RS04185 (B1R45_04180) | - | 918534..918749 (+) | 216 | WP_003171680.1 | hypothetical protein | - |
| B1R45_RS04190 (B1R45_04185) | yacG | 918746..918946 (-) | 201 | WP_003188437.1 | DNA gyrase inhibitor YacG | - |
| B1R45_RS04195 (B1R45_04190) | coaE | 918943..919566 (-) | 624 | WP_078046824.1 | dephospho-CoA kinase | - |
| B1R45_RS04200 (B1R45_04195) | pilD | 919563..920429 (-) | 867 | WP_078046825.1 | prepilin peptidase | Machinery gene |
| B1R45_RS04205 (B1R45_04200) | pilC | 920426..921634 (-) | 1209 | WP_078046826.1 | type II secretion system F family protein | Machinery gene |
| B1R45_RS04210 (B1R45_04205) | - | 921837..922250 (+) | 414 | WP_078050867.1 | pilin | - |
| B1R45_RS04215 (B1R45_04210) | - | 922286..923686 (+) | 1401 | WP_078046827.1 | O-antigen ligase family protein | - |
| B1R45_RS04225 (B1R45_04220) | - | 923968..924273 (+) | 306 | WP_078046828.1 | DUF6388 family protein | - |
| B1R45_RS04230 (B1R45_04225) | nadC | 924317..925165 (-) | 849 | WP_078046829.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
Sequence
Protein
Download Length: 288 a.a. Molecular weight: 31783.80 Da Isoelectric Point: 7.6849
>NTDB_id=218488 B1R45_RS04200 WP_078046825.1 919563..920429(-) (pilD) [Pseudomonas azotoformans strain F77]
MSQLLAVHPWAFVALASVLGLIVGSFLNVLVWRLPKMLEREWRAQAHEVLGLPAEPASPTYTLMQPNSCCPQCDHPIRPW
ENIPLLSYLFLRGRCAHCQGAISARYPLTELTCALISAWVAWHFGYGWQAGAVLVLSWGLLAMSLIDADHQLLPDVLVMP
LLWLGLIINGFGLLTTLSDALWGAVIGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLISSLVGVF
VGLILMRLRKSQASAPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR
MSQLLAVHPWAFVALASVLGLIVGSFLNVLVWRLPKMLEREWRAQAHEVLGLPAEPASPTYTLMQPNSCCPQCDHPIRPW
ENIPLLSYLFLRGRCAHCQGAISARYPLTELTCALISAWVAWHFGYGWQAGAVLVLSWGLLAMSLIDADHQLLPDVLVMP
LLWLGLIINGFGLLTTLSDALWGAVIGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLISSLVGVF
VGLILMRLRKSQASAPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR
Nucleotide
Download Length: 867 bp
>NTDB_id=218488 B1R45_RS04200 WP_078046825.1 919563..920429(-) (pilD) [Pseudomonas azotoformans strain F77]
TTGAGCCAGCTATTGGCTGTACACCCCTGGGCTTTTGTTGCACTGGCGTCGGTGCTGGGGCTGATCGTCGGCAGTTTTCT
CAACGTGCTGGTGTGGCGCCTGCCGAAGATGCTCGAACGGGAATGGCGCGCCCAGGCCCACGAAGTGCTCGGCTTGCCCG
CTGAGCCTGCCAGCCCGACCTACACCCTGATGCAGCCTAATTCCTGCTGCCCACAGTGTGACCATCCGATACGCCCTTGG
GAAAATATCCCACTGCTCAGCTACCTGTTTCTGCGAGGTCGCTGCGCCCATTGCCAGGGTGCGATCAGCGCCCGTTATCC
GCTCACGGAACTGACGTGCGCGCTGATCTCGGCCTGGGTGGCCTGGCATTTCGGCTATGGCTGGCAGGCGGGCGCAGTGC
TGGTATTGAGCTGGGGCTTGTTGGCGATGAGCCTGATCGACGCCGACCACCAACTGTTGCCGGATGTGCTGGTGATGCCG
CTGTTATGGCTGGGGCTGATCATCAACGGCTTCGGCCTGCTGACGACACTGTCGGATGCCCTGTGGGGTGCGGTGATCGG
CTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACTGGCAAGGACGGCATGGGCCATGGCGACTTCAAGC
TGCTGGCCTTGCTCGGCGCCTGGGGTGGCTGGCAAATCCTGCCAATGACGCTGTTGATTTCGTCGCTGGTGGGGGTATTC
GTGGGCTTGATCCTGATGCGCCTGCGCAAGTCCCAAGCGTCGGCACCGATGCCGTTTGGTCCGTATCTGGCGATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA
TTGAGCCAGCTATTGGCTGTACACCCCTGGGCTTTTGTTGCACTGGCGTCGGTGCTGGGGCTGATCGTCGGCAGTTTTCT
CAACGTGCTGGTGTGGCGCCTGCCGAAGATGCTCGAACGGGAATGGCGCGCCCAGGCCCACGAAGTGCTCGGCTTGCCCG
CTGAGCCTGCCAGCCCGACCTACACCCTGATGCAGCCTAATTCCTGCTGCCCACAGTGTGACCATCCGATACGCCCTTGG
GAAAATATCCCACTGCTCAGCTACCTGTTTCTGCGAGGTCGCTGCGCCCATTGCCAGGGTGCGATCAGCGCCCGTTATCC
GCTCACGGAACTGACGTGCGCGCTGATCTCGGCCTGGGTGGCCTGGCATTTCGGCTATGGCTGGCAGGCGGGCGCAGTGC
TGGTATTGAGCTGGGGCTTGTTGGCGATGAGCCTGATCGACGCCGACCACCAACTGTTGCCGGATGTGCTGGTGATGCCG
CTGTTATGGCTGGGGCTGATCATCAACGGCTTCGGCCTGCTGACGACACTGTCGGATGCCCTGTGGGGTGCGGTGATCGG
CTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACTGGCAAGGACGGCATGGGCCATGGCGACTTCAAGC
TGCTGGCCTTGCTCGGCGCCTGGGGTGGCTGGCAAATCCTGCCAATGACGCTGTTGATTTCGTCGCTGGTGGGGGTATTC
GTGGGCTTGATCCTGATGCGCCTGCGCAAGTCCCAAGCGTCGGCACCGATGCCGTTTGGTCCGTATCTGGCGATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
54.577 |
98.611 |
0.538 |
| pilD | Vibrio campbellii strain DS40M4 |
50.877 |
98.958 |
0.503 |
| pilD | Neisseria gonorrhoeae MS11 |
51.111 |
93.75 |
0.479 |
| pilD | Acinetobacter baumannii D1279779 |
49.817 |
94.792 |
0.472 |
| pilD | Acinetobacter nosocomialis M2 |
49.817 |
94.792 |
0.472 |