Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   B1780_RS05795 Genome accession   NZ_CP019838
Coordinates   1150600..1151781 (-) Length   393 a.a.
NCBI ID   WP_004306516.1    Uniprot ID   A0A5Y8Y838
Organism   Campylobacter jejuni subsp. jejuni strain ATCC 33560     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1145600..1156781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1780_RS05765 (B1780_05845) - 1146147..1146488 (+) 342 WP_002869782.1 hypothetical protein -
  B1780_RS05770 (B1780_05850) flgM 1146551..1146748 (+) 198 WP_002855791.1 flagellar biosynthesis anti-sigma factor FlgM -
  B1780_RS05775 (B1780_05855) - 1146790..1147224 (+) 435 WP_002856482.1 flagellar protein FlgN -
  B1780_RS05780 (B1780_05860) flgK 1147234..1149060 (+) 1827 WP_004306510.1 flagellar hook-associated protein FlgK -
  B1780_RS05785 (B1780_05865) - 1149077..1149839 (+) 763 Protein_1131 TIGR02757 family protein -
  B1780_RS05790 (B1780_05870) - 1149843..1150607 (+) 765 WP_004306514.1 TSUP family transporter -
  B1780_RS05795 (B1780_05875) ctsF 1150600..1151781 (-) 1182 WP_004306516.1 type II secretion system F family protein Machinery gene
  B1780_RS05800 (B1780_05880) ctsE 1151778..1153337 (-) 1560 WP_016818338.1 GspE/PulE family protein Machinery gene
  B1780_RS05805 (B1780_05885) ctsX 1153327..1153914 (-) 588 WP_004306520.1 hypothetical protein Machinery gene
  B1780_RS05810 (B1780_05890) ctsP 1153918..1154526 (-) 609 WP_004306521.1 ATP-binding protein Machinery gene
  B1780_RS05815 (B1780_05895) ctsD 1154519..1155931 (-) 1413 WP_004306523.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  B1780_RS05820 (B1780_05900) ctsR 1155909..1156220 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45788.41 Da        Isoelectric Point: 9.0938

>NTDB_id=218452 B1780_RS05795 WP_004306516.1 1150600..1151781(-) (ctsF) [Campylobacter jejuni subsp. jejuni strain ATCC 33560]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGTSLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGINFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=218452 B1780_RS05795 WP_004306516.1 1150600..1151781(-) (ctsF) [Campylobacter jejuni subsp. jejuni strain ATCC 33560]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTGGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGCTAGCTTTGATAAAAACGGCTGAAAAGACAGGAAAAATCAGCGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTGAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCACGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGTGTTGCGATGAAAAGCGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTAATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGATCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Y8Y838

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.469

99.746

0.982

Multiple sequence alignment