Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   B1780_RS05820 Genome accession   NZ_CP019838
Coordinates   1155909..1156220 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain ATCC 33560     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1150909..1161220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1780_RS05800 (B1780_05880) ctsE 1151778..1153337 (-) 1560 WP_016818338.1 GspE/PulE family protein Machinery gene
  B1780_RS05805 (B1780_05885) ctsX 1153327..1153914 (-) 588 WP_004306520.1 hypothetical protein Machinery gene
  B1780_RS05810 (B1780_05890) ctsP 1153918..1154526 (-) 609 WP_004306521.1 ATP-binding protein Machinery gene
  B1780_RS05815 (B1780_05895) ctsD 1154519..1155931 (-) 1413 WP_004306523.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  B1780_RS05820 (B1780_05900) ctsR 1155909..1156220 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  B1780_RS05825 (B1780_05905) nifJ 1156244..1159804 (-) 3561 WP_004306526.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  B1780_RS05830 (B1780_05910) - 1159897..1160538 (-) 642 WP_004306528.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=218457 B1780_RS05820 WP_002862131.1 1155909..1156220(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain ATCC 33560]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=218457 B1780_RS05820 WP_002862131.1 1155909..1156220(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain ATCC 33560]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment