Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PCC7120DELTA_RS17190 Genome accession   NC_003272
Coordinates   3734640..3736268 (-) Length   542 a.a.
NCBI ID   WP_010997238.1    Uniprot ID   Q8YSJ8
Organism   Nostoc sp. PCC 7120 = FACHB-418     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3729640..3741268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCC7120DELTA_RS31840 - 3730015..3730224 (+) 210 WP_010997232.1 hypothetical protein -
  PCC7120DELTA_RS17165 - 3730166..3730633 (+) 468 WP_070205945.1 transposase -
  PCC7120DELTA_RS17170 (all3083) - 3730711..3731979 (-) 1269 WP_010997234.1 tetratricopeptide repeat protein -
  PCC7120DELTA_RS17175 (all3084) - 3732297..3732965 (-) 669 WP_010997235.1 2OG-Fe dioxygenase family protein -
  PCC7120DELTA_RS17180 (alr3085) sfsA 3733322..3734047 (+) 726 WP_010997236.1 DNA/RNA nuclease SfsA -
  PCC7120DELTA_RS17185 (alr3086) - 3734056..3734538 (+) 483 WP_010997237.1 gluconokinase -
  PCC7120DELTA_RS17190 (all3087) comA 3734640..3736268 (-) 1629 WP_010997238.1 DUF655 domain-containing protein Machinery gene
  PCC7120DELTA_RS17195 (alr3088) - 3736385..3737548 (+) 1164 WP_010997239.1 cysteine desulfurase family protein -
  PCC7120DELTA_RS17200 (asr3089) - 3737880..3738152 (+) 273 WP_010997240.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  PCC7120DELTA_RS17205 (alr3090) - 3738323..3739015 (+) 693 WP_010997241.1 manganese catalase family protein -
  PCC7120DELTA_RS17210 (alr3091) - 3739240..3739968 (+) 729 WP_010997242.1 DUF3891 family protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 61049.16 Da        Isoelectric Point: 6.5110

>NTDB_id=21844 PCC7120DELTA_RS17190 WP_010997238.1 3734640..3736268(-) (comA) [Nostoc sp. PCC 7120 = FACHB-418]
MQIFPAFRNFWVFFLIVAIAACQKVQSHNNRPAPLPQDSFVKVYFNQSESSEYREPYRQQTRLGDNLEQQIVDAISQAKS
TIDVAVQELRLPRIAQALKDKQKAGIKVRVILENTYTRSLSSLTPEEVKKLPEREQARYQEYFKFVDLNQDNQLSPEELN
QRDALIILQNAKIPWIDDQADGSAGSKLMHHKFVVVDNRIVIVTSANFTLSDVFGDFSNSSSLGNANNLLHIDSPELAAL
FTEEFNLMWGDGVGGKPDSKFGLQKPVRSPQKITLGDNSITVHFSPTSPTLPWTQSSNGLISETLNLASKSIDMALFVFS
EQRLANTLEKRHQQQVSIRALIDKQFAYRYYSEALDMMGIALSNKCRYEIDNRPWSNPVTTVGVPILREGDLLHHKFSVI
DNQTVITGSHNWSDAANYGNDETLIVINNPTIAAHYEREFARLYAKAQVGIPAKVQAQIQQEQKQCGQIQTPTSSELTPT
QVVNINTADLAELETLPGVGKKLAQKIIIARQQQKFVSSQDLDKVPGISPMMIENWEGRIQF

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=21844 PCC7120DELTA_RS17190 WP_010997238.1 3734640..3736268(-) (comA) [Nostoc sp. PCC 7120 = FACHB-418]
GTGCAGATTTTCCCAGCATTTAGGAATTTTTGGGTCTTTTTTTTGATAGTGGCGATCGCTGCCTGTCAAAAAGTCCAATC
TCACAATAATCGTCCTGCACCTCTACCGCAAGACTCATTTGTGAAAGTTTACTTTAATCAATCCGAATCCTCAGAATATC
GAGAACCTTACCGTCAACAAACTCGACTGGGAGATAACTTAGAACAGCAGATTGTTGACGCTATTTCTCAAGCTAAATCT
ACTATAGATGTAGCAGTACAAGAATTGCGTTTACCTAGAATCGCCCAAGCCCTCAAAGACAAACAAAAAGCTGGCATCAA
AGTCAGAGTAATTTTAGAAAATACCTATACTCGTTCTTTGAGTAGCTTGACACCAGAGGAAGTCAAGAAATTACCTGAAC
GGGAACAAGCACGCTATCAAGAATACTTTAAATTTGTAGACCTAAACCAAGATAATCAACTCAGTCCTGAGGAACTTAAT
CAGAGGGATGCACTAATAATTTTACAAAACGCCAAAATTCCTTGGATTGATGATCAAGCTGATGGTTCAGCAGGTAGTAA
GTTGATGCACCACAAGTTTGTGGTTGTAGATAATCGCATAGTAATTGTGACTTCAGCAAACTTCACTTTAAGCGATGTTT
TCGGTGATTTTTCTAATTCTTCTAGTTTGGGAAATGCCAACAACCTATTACACATTGATAGTCCAGAATTAGCAGCTTTA
TTCACAGAAGAATTTAACCTCATGTGGGGTGATGGTGTTGGAGGTAAACCAGACAGTAAATTTGGTTTACAGAAACCTGT
TCGTTCTCCCCAAAAAATCACCTTGGGTGACAACTCAATTACTGTACATTTTTCTCCAACTTCACCCACCTTACCTTGGA
CTCAAAGCAGCAATGGCTTAATTAGTGAGACCTTAAATTTAGCGAGTAAATCTATTGATATGGCGTTGTTTGTTTTTTCT
GAACAACGCCTGGCCAATACATTAGAAAAACGTCATCAACAACAGGTCTCAATTCGAGCATTAATTGACAAACAATTCGC
TTATCGCTATTACAGCGAAGCTTTAGATATGATGGGAATTGCCCTGAGTAATAAATGCCGATATGAAATTGACAATCGAC
CTTGGTCTAATCCAGTTACTACGGTAGGCGTACCCATTTTACGTGAAGGAGACCTGCTACACCATAAATTTTCTGTCATC
GACAACCAAACAGTAATTACGGGTTCTCACAACTGGTCTGATGCAGCAAATTACGGCAATGATGAGACTTTGATAGTAAT
TAATAATCCCACAATTGCTGCTCATTATGAGCGTGAATTTGCTCGTTTGTATGCTAAAGCTCAAGTCGGTATCCCAGCCA
AAGTCCAAGCACAAATTCAACAAGAACAAAAGCAATGTGGTCAAATTCAAACTCCCACTTCCAGCGAACTGACTCCTACT
CAAGTAGTGAATATCAATACAGCAGATTTAGCAGAATTAGAAACCTTACCCGGTGTAGGTAAAAAGCTAGCTCAAAAAAT
TATCATCGCCCGTCAGCAGCAAAAATTTGTCTCATCACAAGACTTGGATAAAGTACCTGGAATTAGTCCAATGATGATAG
AAAATTGGGAAGGGCGTATTCAATTTTAG

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(71-249)

PLD-like domain (PLDc_2)

(302-443)

Helix-hairpin-helix motif (HHH_3)

(481-540)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8YSJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

49.171

100

0.493

Multiple sequence alignment