Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AZI10_RS00050 Genome accession   NZ_CP019750
Coordinates   11617..12183 (+) Length   188 a.a.
NCBI ID   WP_011666823.1    Uniprot ID   M5ABA8
Organism   Levilactobacillus brevis strain TMW 1.2113     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6617..17183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AZI10_RS00040 (AZI10_00040) - 9127..10389 (-) 1263 WP_085762598.1 ISL3 family transposase -
  AZI10_RS00045 (AZI10_00045) rpsF 11287..11583 (+) 297 WP_011666822.1 30S ribosomal protein S6 -
  AZI10_RS00050 (AZI10_00050) ssb 11617..12183 (+) 567 WP_011666823.1 single-stranded DNA-binding protein Machinery gene
  AZI10_RS00055 (AZI10_00055) rpsR 12212..12448 (+) 237 WP_011666824.1 30S ribosomal protein S18 -
  AZI10_RS00060 (AZI10_00060) - 12594..13780 (-) 1187 Protein_11 amidohydrolase family protein -
  AZI10_RS00065 (AZI10_00065) - 13811..15418 (-) 1608 WP_085762599.1 peptide ABC transporter substrate-binding protein -
  AZI10_RS00070 (AZI10_00070) - 16027..16803 (+) 777 WP_085762600.1 D-alanyl-D-alanine carboxypeptidase -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20513.13 Da        Isoelectric Point: 4.7381

>NTDB_id=218225 AZI10_RS00050 WP_011666823.1 11617..12183(+) (ssb) [Levilactobacillus brevis strain TMW 1.2113]
MINRVVLTGRLTRDVDLRYTQGGAAVATFTLAVDRRFTNQQGEREADFVSCVIWRKSAENFANFFHKGSLVGIEGRIQTR
NYENQQGQRVYVTEVVVENFSFLEPRSRNENNGGGNYNGGSMNNNAPQNQNQNANPYTSGNPAPAAPSQGMAPNSGSNNQ
NSNANNNAADPFANSGDSIDISDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=218225 AZI10_RS00050 WP_011666823.1 11617..12183(+) (ssb) [Levilactobacillus brevis strain TMW 1.2113]
ATGATCAACCGAGTAGTACTTACTGGCCGACTAACACGGGATGTTGACTTACGCTACACCCAAGGCGGTGCTGCTGTAGC
CACCTTCACGCTGGCCGTTGATCGGCGGTTCACCAACCAACAAGGTGAACGAGAAGCTGATTTCGTAAGTTGCGTCATTT
GGCGCAAGTCCGCGGAAAACTTTGCCAACTTCTTCCACAAGGGTTCCCTTGTCGGTATTGAAGGGCGCATCCAGACCCGG
AATTACGAAAATCAACAGGGCCAACGGGTTTACGTCACCGAAGTGGTTGTCGAGAACTTTTCGTTCTTGGAACCCCGTTC
TCGTAACGAGAACAACGGTGGTGGAAACTACAATGGCGGCTCCATGAATAATAATGCTCCTCAAAATCAGAATCAAAATG
CCAATCCATACACGAGTGGGAATCCAGCTCCGGCTGCGCCTTCTCAAGGTATGGCCCCGAATTCTGGAAGTAACAATCAG
AACAGTAATGCGAACAACAATGCAGCTGATCCGTTTGCCAATTCTGGCGATTCCATTGACATTTCCGATGATGATTTACC
GTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M5ABA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.702

100

0.617
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.143

100

0.574

Multiple sequence alignment