Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FORC42_RS06725 Genome accession   NZ_CP025318
Coordinates   1256253..1256990 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain FORC_042     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1251253..1261990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC42_RS06690 (FORC42_1239) yfiL 1251411..1251776 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  FORC42_RS06695 (FORC42_1240) aroF 1251986..1253056 (+) 1071 WP_089645709.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  FORC42_RS06700 (FORC42_1241) tyrA 1253067..1254188 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  FORC42_RS06705 (FORC42_1242) pheA 1254231..1255391 (-) 1161 WP_000200100.1 bifunctional chorismate mutase/prephenate dehydratase -
  FORC42_RS06710 pheL 1255490..1255537 (-) 48 WP_001700969.1 pheA operon leader peptide PheL -
  FORC42_RS06715 (FORC42_1243) raiA 1255641..1255982 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  FORC42_RS06725 (FORC42_1244) comL 1256253..1256990 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  FORC42_RS06730 (FORC42_1245) rluD 1257125..1258105 (+) 981 WP_104951066.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FORC42_RS06735 (FORC42_1246) yfiH 1258102..1258833 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  FORC42_RS06740 (FORC42_1247) clpC 1258963..1261536 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=218202 FORC42_RS06725 WP_000197686.1 1256253..1256990(-) (comL) [Escherichia coli strain FORC_042]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=218202 FORC42_RS06725 WP_000197686.1 1256253..1256990(-) (comL) [Escherichia coli strain FORC_042]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376