Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AZI11_RS00040 | Genome accession | NZ_CP019734 |
| Coordinates | 10079..10645 (+) | Length | 188 a.a. |
| NCBI ID | WP_011666823.1 | Uniprot ID | M5ABA8 |
| Organism | Levilactobacillus brevis strain TMW 1.2108 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 5079..15645
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AZI11_RS00030 (AZI11_00030) | gyrA | 6538..9072 (+) | 2535 | WP_011666821.1 | DNA gyrase subunit A | - |
| AZI11_RS00035 (AZI11_00035) | rpsF | 9749..10045 (+) | 297 | WP_011666822.1 | 30S ribosomal protein S6 | - |
| AZI11_RS00040 (AZI11_00040) | ssb | 10079..10645 (+) | 567 | WP_011666823.1 | single-stranded DNA-binding protein | Machinery gene |
| AZI11_RS00045 (AZI11_00045) | rpsR | 10674..10910 (+) | 237 | WP_011666824.1 | 30S ribosomal protein S18 | - |
| AZI11_RS00050 (AZI11_00050) | - | 11055..12242 (-) | 1188 | WP_085768514.1 | amidohydrolase family protein | - |
| AZI11_RS00055 (AZI11_00055) | - | 12273..13880 (-) | 1608 | WP_085768515.1 | peptide ABC transporter substrate-binding protein | - |
| AZI11_RS00060 (AZI11_00060) | - | 14489..15265 (+) | 777 | WP_085768516.1 | D-alanyl-D-alanine carboxypeptidase | - |
Sequence
Protein
Download Length: 188 a.a. Molecular weight: 20513.13 Da Isoelectric Point: 4.7381
>NTDB_id=218198 AZI11_RS00040 WP_011666823.1 10079..10645(+) (ssb) [Levilactobacillus brevis strain TMW 1.2108]
MINRVVLTGRLTRDVDLRYTQGGAAVATFTLAVDRRFTNQQGEREADFVSCVIWRKSAENFANFFHKGSLVGIEGRIQTR
NYENQQGQRVYVTEVVVENFSFLEPRSRNENNGGGNYNGGSMNNNAPQNQNQNANPYTSGNPAPAAPSQGMAPNSGSNNQ
NSNANNNAADPFANSGDSIDISDDDLPF
MINRVVLTGRLTRDVDLRYTQGGAAVATFTLAVDRRFTNQQGEREADFVSCVIWRKSAENFANFFHKGSLVGIEGRIQTR
NYENQQGQRVYVTEVVVENFSFLEPRSRNENNGGGNYNGGSMNNNAPQNQNQNANPYTSGNPAPAAPSQGMAPNSGSNNQ
NSNANNNAADPFANSGDSIDISDDDLPF
Nucleotide
Download Length: 567 bp
>NTDB_id=218198 AZI11_RS00040 WP_011666823.1 10079..10645(+) (ssb) [Levilactobacillus brevis strain TMW 1.2108]
ATGATCAACCGAGTAGTACTTACTGGCCGACTAACACGGGATGTTGACTTACGCTACACCCAAGGCGGTGCTGCTGTAGC
CACCTTCACGCTGGCCGTTGATCGGCGGTTCACCAACCAACAAGGTGAACGAGAAGCTGATTTCGTAAGTTGCGTCATTT
GGCGCAAGTCCGCGGAAAACTTTGCCAACTTCTTCCACAAGGGTTCCCTTGTCGGTATTGAAGGGCGCATCCAGACCCGG
AATTACGAAAATCAACAGGGCCAACGGGTTTACGTCACCGAAGTGGTTGTCGAGAACTTTTCGTTCTTGGAACCCCGTTC
TCGTAACGAGAACAACGGTGGTGGAAACTACAATGGCGGCTCCATGAATAATAATGCTCCTCAAAATCAGAATCAAAATG
CCAATCCATACACGAGTGGTAATCCAGCTCCGGCTGCGCCTTCTCAAGGTATGGCCCCGAATTCTGGAAGTAACAATCAG
AACAGTAATGCGAACAACAATGCAGCTGATCCGTTTGCCAATTCTGGCGATTCCATTGACATTTCCGATGATGATTTACC
GTTCTAA
ATGATCAACCGAGTAGTACTTACTGGCCGACTAACACGGGATGTTGACTTACGCTACACCCAAGGCGGTGCTGCTGTAGC
CACCTTCACGCTGGCCGTTGATCGGCGGTTCACCAACCAACAAGGTGAACGAGAAGCTGATTTCGTAAGTTGCGTCATTT
GGCGCAAGTCCGCGGAAAACTTTGCCAACTTCTTCCACAAGGGTTCCCTTGTCGGTATTGAAGGGCGCATCCAGACCCGG
AATTACGAAAATCAACAGGGCCAACGGGTTTACGTCACCGAAGTGGTTGTCGAGAACTTTTCGTTCTTGGAACCCCGTTC
TCGTAACGAGAACAACGGTGGTGGAAACTACAATGGCGGCTCCATGAATAATAATGCTCCTCAAAATCAGAATCAAAATG
CCAATCCATACACGAGTGGTAATCCAGCTCCGGCTGCGCCTTCTCAAGGTATGGCCCCGAATTCTGGAAGTAACAATCAG
AACAGTAATGCGAACAACAATGCAGCTGATCCGTTTGCCAATTCTGGCGATTCCATTGACATTTCCGATGATGATTTACC
GTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
61.702 |
100 |
0.617 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.143 |
100 |
0.574 |