Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CXQ83_RS05325 Genome accession   NZ_CP025281
Coordinates   1018017..1018565 (+) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain YH503     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1013017..1023565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXQ83_RS05300 (CXQ83_05270) rseP 1013132..1014235 (+) 1104 WP_058001840.1 RIP metalloprotease RseP -
  CXQ83_RS05305 (CXQ83_05275) - 1014232..1015087 (+) 856 Protein_1021 VirK family antimicrobial peptide resistance protein -
  CXQ83_RS05310 (CXQ83_05280) - 1015080..1016081 (-) 1002 WP_002777078.1 sugar phosphate isomerase/epimerase family protein -
  CXQ83_RS05315 (CXQ83_05285) - 1016081..1017352 (-) 1272 WP_002777080.1 MFS transporter -
  CXQ83_RS05320 (CXQ83_05290) rpsF 1017631..1018008 (+) 378 WP_002777082.1 30S ribosomal protein S6 -
  CXQ83_RS05325 (CXQ83_05295) ssb 1018017..1018565 (+) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  CXQ83_RS05330 (CXQ83_05300) rpsR 1018576..1018836 (+) 261 WP_002777087.1 30S ribosomal protein S18 -
  CXQ83_RS05335 (CXQ83_05305) lon 1018893..1021268 (-) 2376 WP_057032694.1 endopeptidase La -
  CXQ83_RS05340 (CXQ83_05310) bamD 1021284..1021931 (-) 648 WP_002803789.1 outer membrane protein assembly factor BamD -
  CXQ83_RS05345 (CXQ83_05315) fliW 1022095..1022484 (+) 390 WP_002777093.1 flagellar assembly protein FliW -
  CXQ83_RS05350 (CXQ83_05320) proC 1022484..1023221 (+) 738 WP_002824859.1 pyrroline-5-carboxylate reductase Machinery gene
  CXQ83_RS05355 (CXQ83_05325) ctsT 1023218..1023523 (+) 306 WP_052784994.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=218149 CXQ83_RS05325 WP_002777084.1 1018017..1018565(+) (ssb) [Campylobacter coli strain YH503]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=218149 CXQ83_RS05325 WP_002777084.1 1018017..1018565(+) (ssb) [Campylobacter coli strain YH503]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCAGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAATATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTATGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379