Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   CXQ83_RS05355 Genome accession   NZ_CP025281
Coordinates   1023218..1023523 (+) Length   101 a.a.
NCBI ID   WP_052784994.1    Uniprot ID   -
Organism   Campylobacter coli strain YH503     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1018218..1028523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXQ83_RS05330 (CXQ83_05300) rpsR 1018576..1018836 (+) 261 WP_002777087.1 30S ribosomal protein S18 -
  CXQ83_RS05335 (CXQ83_05305) lon 1018893..1021268 (-) 2376 WP_057032694.1 endopeptidase La -
  CXQ83_RS05340 (CXQ83_05310) bamD 1021284..1021931 (-) 648 WP_002803789.1 outer membrane protein assembly factor BamD -
  CXQ83_RS05345 (CXQ83_05315) fliW 1022095..1022484 (+) 390 WP_002777093.1 flagellar assembly protein FliW -
  CXQ83_RS05350 (CXQ83_05320) proC 1022484..1023221 (+) 738 WP_002824859.1 pyrroline-5-carboxylate reductase Machinery gene
  CXQ83_RS05355 (CXQ83_05325) ctsT 1023218..1023523 (+) 306 WP_052784994.1 hypothetical protein Machinery gene
  CXQ83_RS05360 (CXQ83_05330) - 1023516..1024184 (+) 669 WP_002777103.1 hypothetical protein -
  CXQ83_RS05365 (CXQ83_05335) - 1024181..1024633 (+) 453 WP_002777117.1 hypothetical protein -
  CXQ83_RS05370 (CXQ83_05340) - 1024626..1025255 (-) 630 WP_002824854.1 uroporphyrinogen-III synthase -
  CXQ83_RS05375 (CXQ83_05345) thiE 1025233..1025865 (-) 633 WP_002824853.1 thiamine phosphate synthase -
  CXQ83_RS05380 (CXQ83_05350) thiD 1025855..1026667 (-) 813 WP_002824851.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  CXQ83_RS05385 (CXQ83_05355) - 1026667..1027350 (-) 684 WP_002824849.1 3-methyladenine DNA glycosylase -
  CXQ83_RS05390 (CXQ83_05360) - 1027347..1028108 (-) 762 WP_025399045.1 ATP-binding protein -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 12274.08 Da        Isoelectric Point: 6.0617

>NTDB_id=218151 CXQ83_RS05355 WP_052784994.1 1023218..1023523(+) (ctsT) [Campylobacter coli strain YH503]
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDLKENSANDN
IFQFKKLHIQNQDYSLYFYDE

Nucleotide


Download         Length: 306 bp        

>NTDB_id=218151 CXQ83_RS05355 WP_052784994.1 1023218..1023523(+) (ctsT) [Campylobacter coli strain YH503]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATCTTAAAGAAAACTCTGCAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

48.98

97.03

0.475