Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   CXP32_RS11525 Genome accession   NZ_CP025256
Coordinates   2152534..2153631 (+) Length   365 a.a.
NCBI ID   WP_000266660.1    Uniprot ID   Q97N44
Organism   Streptococcus pneumoniae strain Xen35     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2147534..2158631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXP32_RS11500 (CXP32_11500) pgsA 2148055..2148600 (-) 546 WP_000712132.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CXP32_RS11505 (CXP32_11505) rodZ 2148611..2149432 (-) 822 WP_001227958.1 cytoskeleton protein RodZ -
  CXP32_RS11510 (CXP32_11510) - 2149474..2150757 (-) 1284 WP_000170214.1 pitrilysin family protein -
  CXP32_RS11515 (CXP32_11515) - 2150754..2152004 (-) 1251 WP_000424267.1 pitrilysin family protein -
  CXP32_RS11520 (CXP32_11520) yaaA 2152163..2152531 (+) 369 WP_000455867.1 S4 domain-containing protein YaaA -
  CXP32_RS11525 (CXP32_11525) recF 2152534..2153631 (+) 1098 WP_000266660.1 DNA replication/repair protein RecF Machinery gene
  CXP32_RS11530 (CXP32_11530) guaB 2153682..2155160 (-) 1479 WP_000073428.1 IMP dehydrogenase -
  CXP32_RS11535 (CXP32_11535) trpS 2155312..2156337 (-) 1026 WP_000165444.1 tryptophan--tRNA ligase -
  CXP32_RS11540 (CXP32_11540) - 2156543..2158165 (+) 1623 WP_000958770.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41900.00 Da        Isoelectric Point: 9.0596

>NTDB_id=217970 CXP32_RS11525 WP_000266660.1 2152534..2153631(+) (recF) [Streptococcus pneumoniae strain Xen35]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSAQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKAAVNGN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=217970 CXP32_RS11525 WP_000266660.1 2152534..2153631(+) (recF) [Streptococcus pneumoniae strain Xen35]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGTCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGCTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCTATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTGCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97N44

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

99.726

100

0.997
  recF Bacillus subtilis subsp. subtilis str. 168

45.902

100

0.46