Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   CXB69_RS08870 Genome accession   NZ_CP025206
Coordinates   1782731..1783345 (-) Length   204 a.a.
NCBI ID   WP_011374972.1    Uniprot ID   Q38W54
Organism   Latilactobacillus sakei strain WiKim0074     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1777731..1788345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXB69_RS08845 (CXB69_08835) - 1777811..1778137 (-) 327 WP_011374977.1 heavy metal-binding domain-containing protein -
  CXB69_RS08850 (CXB69_08840) - 1778154..1778519 (-) 366 WP_011374976.1 DUF1304 domain-containing protein -
  CXB69_RS08855 (CXB69_08845) galE 1778605..1779597 (-) 993 WP_035146095.1 UDP-glucose 4-epimerase GalE -
  CXB69_RS08860 (CXB69_08850) recJ 1779742..1782054 (+) 2313 WP_035146098.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  CXB69_RS08865 (CXB69_08855) - 1782078..1782596 (+) 519 WP_011374973.1 adenine phosphoribosyltransferase -
  CXB69_RS08870 (CXB69_08860) dinR/lexA 1782731..1783345 (-) 615 WP_011374972.1 transcriptional repressor LexA Regulator
  CXB69_RS08875 (CXB69_08865) - 1783480..1783722 (+) 243 WP_035146102.1 DUF896 domain-containing protein -
  CXB69_RS08880 (CXB69_08870) - 1783803..1784033 (+) 231 WP_101377985.1 YneF family protein -
  CXB69_RS08885 (CXB69_08875) - 1784175..1785920 (+) 1746 WP_112234093.1 ABC transporter ATP-binding protein -
  CXB69_RS08890 (CXB69_08880) - 1785922..1787712 (+) 1791 WP_025016407.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22567.96 Da        Isoelectric Point: 4.9705

>NTDB_id=217518 CXB69_RS08870 WP_011374972.1 1782731..1783345(-) (dinR/lexA) [Latilactobacillus sakei strain WiKim0074]
MTKTESKQLEVLRFIHERVQDKGYPPTVREICEAVNLSSTSTVHGHLARLEKKGLLQKDPTKPRAIELTPAGLTAIGATP
QKIPVLGVVTAGVPILAVEEATDYFPLPPSLQTEQDLFMLTIRGESMINAGILDGDEVIIRKQSTADNGDIVIAMTAEDE
ATCKRFFKEADHYRLQPENDTFEPIILNEVSILGKVVGLYRDRM

Nucleotide


Download         Length: 615 bp        

>NTDB_id=217518 CXB69_RS08870 WP_011374972.1 1782731..1783345(-) (dinR/lexA) [Latilactobacillus sakei strain WiKim0074]
ATGACTAAAACTGAATCCAAACAATTAGAGGTCTTACGTTTTATTCACGAACGTGTTCAAGACAAAGGTTACCCACCAAC
GGTCCGCGAGATTTGCGAAGCCGTTAATTTATCGTCCACTTCTACTGTCCATGGCCATTTAGCCCGACTTGAGAAGAAGG
GCTTATTACAAAAGGATCCCACTAAACCACGGGCGATCGAGTTAACGCCCGCTGGCCTAACGGCAATTGGGGCAACACCC
CAGAAAATCCCAGTATTAGGGGTGGTTACTGCCGGTGTGCCTATCTTAGCAGTTGAAGAAGCAACTGATTACTTCCCGCT
TCCACCTAGTTTGCAAACCGAACAAGATTTGTTCATGCTAACAATTCGTGGTGAAAGTATGATTAACGCCGGTATCTTAG
ATGGCGACGAAGTTATCATTCGCAAGCAATCAACCGCCGATAATGGCGATATTGTCATTGCGATGACTGCCGAAGATGAA
GCAACCTGCAAACGGTTCTTCAAAGAAGCAGATCACTATCGTCTCCAACCAGAAAACGATACGTTTGAACCAATCATTTT
AAATGAAGTCAGCATTCTAGGGAAGGTCGTTGGCCTTTACCGGGATCGCATGTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(3-65)

Peptidase S24-like (Peptidase_S24)

(84-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38W54

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

59.901

99.02

0.593