Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   CXB69_RS08860 Genome accession   NZ_CP025206
Coordinates   1779742..1782054 (+) Length   770 a.a.
NCBI ID   WP_035146098.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0074     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1774742..1787054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXB69_RS08835 (CXB69_08825) - 1775657..1776052 (+) 396 WP_016265361.1 LPXTG cell wall anchor domain-containing protein -
  CXB69_RS08840 (CXB69_08830) - 1776042..1777760 (+) 1719 WP_112234092.1 WxL domain-containing protein -
  CXB69_RS08845 (CXB69_08835) - 1777811..1778137 (-) 327 WP_011374977.1 heavy metal-binding domain-containing protein -
  CXB69_RS08850 (CXB69_08840) - 1778154..1778519 (-) 366 WP_011374976.1 DUF1304 domain-containing protein -
  CXB69_RS08855 (CXB69_08845) galE 1778605..1779597 (-) 993 WP_035146095.1 UDP-glucose 4-epimerase GalE -
  CXB69_RS08860 (CXB69_08850) recJ 1779742..1782054 (+) 2313 WP_035146098.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  CXB69_RS08865 (CXB69_08855) - 1782078..1782596 (+) 519 WP_011374973.1 adenine phosphoribosyltransferase -
  CXB69_RS08870 (CXB69_08860) dinR/lexA 1782731..1783345 (-) 615 WP_011374972.1 transcriptional repressor LexA Regulator
  CXB69_RS08875 (CXB69_08865) - 1783480..1783722 (+) 243 WP_035146102.1 DUF896 domain-containing protein -
  CXB69_RS08880 (CXB69_08870) - 1783803..1784033 (+) 231 WP_101377985.1 YneF family protein -
  CXB69_RS08885 (CXB69_08875) - 1784175..1785920 (+) 1746 WP_112234093.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 770 a.a.        Molecular weight: 84873.75 Da        Isoelectric Point: 4.5635

>NTDB_id=217517 CXB69_RS08860 WP_035146098.1 1779742..1782054(+) (recJ) [Latilactobacillus sakei strain WiKim0074]
MEAQYEWQLKPVPTEDELQTITKDNPLPKAAAQLLWQRGLRDAEQINDFMNPNVGQLHDPYALHDMQKAIDRIQEAIVNG
EKITIYGDYDADGITSTTLMKETLDDLGADVEVYVPNRFKDGYGPNLEAYKRLIENGTQLIVTVDNGVSGLEPIAYAQEH
GVDVVVTDHHELPSELPNAVAIVHPRHPEGQYPFGELCGVGVAFKVATALLEEIPYDKLDLAAIGTVCDIVPLVDENRTL
VSLGLQQLQNTDRPGLVALCQSAGLEQATLDATNIGFGIGPRLNAIGRLGDATLGVQLLTTLDDEEAVEQAQFIEQQNKK
RQGLVKEITAMAMTIAETTENQASATLVIAHEGWHEGVLGIVASHVVEQTGKPTLVLTIDPETGLAKGSGRSVTAFHLFK
ALDAHRELLVHFGGHHMAVGLTAKVDQLALIQTAMNEYAQVNQLDLTGRQPLPVDLALTLADITPDLYQALQQLAPFGSD
NPEPLIELSAPQLADVKQIGADQKHLKMMAVDQQQQLAVLAFNKGALMPDLTAAEDVKLVGSLSENTWRGQTTLQLMVKD
LATSGQVVLDQRSNRLTKQLFQSTGDYVFFNDKMREQLQSYLPAGSQALLATDEQVATSQELIVVDEPADLTAFEQFYQQ
QQAAKLSLIFYAKHSAYLEGMPTKQQFATFLVYLRKHPNIEKARLAELAAYLKLQLPLMIFMLQVFFDLGFVRIERGLIT
AELQPEKHALESAPSYQKRLAKIEMEKQLVYSTFTEVKDWLATLPAVANR

Nucleotide


Download         Length: 2313 bp        

>NTDB_id=217517 CXB69_RS08860 WP_035146098.1 1779742..1782054(+) (recJ) [Latilactobacillus sakei strain WiKim0074]
TTGGAAGCACAATATGAATGGCAATTAAAACCAGTACCAACTGAAGATGAATTACAAACAATTACAAAAGACAATCCGCT
ACCCAAGGCTGCGGCCCAACTTTTGTGGCAACGTGGCTTGCGGGATGCAGAGCAGATCAATGATTTTATGAATCCCAATG
TCGGTCAACTTCACGATCCATACGCTTTGCATGATATGCAAAAGGCGATTGATCGAATTCAAGAAGCGATTGTGAACGGC
GAAAAAATTACGATTTATGGCGATTATGACGCGGACGGGATCACAAGTACCACTTTGATGAAGGAAACTTTAGACGACTT
AGGTGCCGATGTTGAAGTCTATGTGCCTAATCGTTTTAAGGATGGCTACGGGCCTAATTTAGAAGCTTATAAACGCTTGA
TTGAAAATGGCACCCAATTAATTGTGACCGTCGATAACGGGGTGAGTGGCTTAGAACCAATCGCTTATGCGCAAGAACAC
GGTGTTGACGTGGTCGTGACCGATCACCATGAATTACCATCAGAATTACCCAACGCAGTGGCGATTGTGCATCCCAGACA
TCCAGAAGGGCAATATCCTTTTGGCGAACTCTGTGGGGTCGGTGTGGCGTTTAAAGTAGCGACTGCTTTATTAGAAGAGA
TTCCTTACGATAAATTAGATTTAGCCGCAATCGGGACGGTTTGTGATATCGTCCCCTTAGTCGATGAAAACCGGACGTTG
GTTAGCTTAGGCTTACAACAATTACAAAATACCGATCGACCAGGTTTGGTTGCATTGTGCCAATCAGCCGGCTTAGAACA
AGCGACACTAGATGCCACTAACATTGGCTTTGGGATTGGTCCCCGTTTAAACGCAATTGGTCGTTTAGGTGATGCGACCC
TTGGTGTGCAATTGTTGACGACGCTTGATGACGAAGAAGCAGTCGAACAGGCACAATTTATTGAACAACAAAATAAAAAA
CGCCAAGGTCTGGTAAAGGAAATTACGGCAATGGCAATGACAATTGCTGAAACAACGGAAAATCAAGCGAGTGCAACCTT
AGTTATTGCCCATGAAGGTTGGCACGAAGGGGTGCTAGGGATTGTAGCTAGTCACGTTGTTGAACAGACCGGTAAACCAA
CCTTAGTCTTGACGATTGACCCGGAAACTGGCTTAGCTAAAGGCTCTGGTCGTAGTGTGACAGCTTTCCATTTATTTAAA
GCGTTAGATGCCCACCGTGAATTATTGGTTCATTTTGGTGGCCATCACATGGCAGTTGGCTTGACTGCTAAGGTTGATCA
ATTAGCGCTGATTCAAACTGCAATGAACGAGTATGCGCAAGTTAATCAGTTAGATTTAACAGGACGCCAACCATTACCAG
TTGATTTGGCGCTGACGCTAGCTGATATTACGCCTGATTTATATCAAGCATTGCAACAACTGGCACCTTTTGGCAGTGAT
AATCCAGAACCGTTGATTGAACTTAGCGCGCCCCAGTTAGCCGATGTCAAACAAATCGGTGCTGATCAGAAGCATTTGAA
GATGATGGCGGTCGATCAACAACAACAATTAGCGGTTTTAGCTTTCAATAAAGGGGCTTTGATGCCCGATTTAACTGCCG
CTGAAGATGTGAAATTAGTCGGGAGTTTGAGTGAGAATACTTGGCGTGGCCAGACGACGTTGCAATTAATGGTAAAAGAC
CTTGCTACAAGTGGGCAAGTCGTACTTGATCAACGTAGCAATCGTCTGACAAAACAATTATTCCAATCAACAGGCGACTA
CGTCTTTTTTAATGATAAAATGCGCGAGCAACTGCAGTCTTATTTACCGGCAGGGAGTCAGGCGCTGTTAGCGACCGATG
AACAAGTTGCTACTAGCCAAGAGCTAATTGTAGTTGATGAACCAGCTGATTTAACTGCTTTTGAACAATTTTATCAACAA
CAACAGGCCGCTAAATTAAGCTTGATTTTTTATGCTAAACACTCTGCTTACTTAGAAGGAATGCCGACAAAACAACAGTT
TGCGACTTTCTTAGTTTACTTGCGGAAACATCCAAATATTGAAAAAGCGCGGTTAGCAGAATTAGCGGCGTATTTAAAAT
TACAATTACCGTTAATGATTTTCATGTTGCAGGTGTTTTTTGACCTCGGATTTGTTAGAATAGAACGTGGTCTGATTACG
GCCGAGTTACAACCTGAAAAGCATGCACTGGAAAGTGCACCAAGTTATCAAAAACGATTAGCTAAAATTGAAATGGAAAA
ACAGCTTGTTTATTCAACCTTTACCGAGGTGAAAGACTGGCTAGCAACTCTCCCAGCAGTAGCAAATCGCTAA

Domains

Predicted by InterProScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-761)

DHHA1 domain (DHHA1)

(316-437)

RecJ OB domain (RecJ_OB)

(454-560)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

40.21

98.831

0.397
  recJ Bacillus subtilis subsp. subtilis str. 168

37.371

100

0.377