Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CWI22_RS29420 Genome accession   NZ_CP025053
Coordinates   6157299..6157973 (-) Length   224 a.a.
NCBI ID   WP_003096559.1    Uniprot ID   Q02E43
Organism   Pseudomonas aeruginosa strain PB354     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6152299..6162973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI22_RS29390 (CWI22_29390) - 6152474..6153808 (+) 1335 WP_016562488.1 aspartate aminotransferase family protein -
  CWI22_RS29395 (CWI22_29395) - 6153874..6154236 (+) 363 WP_003096551.1 cupin domain-containing protein -
  CWI22_RS29400 (CWI22_29400) rpmG 6154370..6154525 (-) 156 WP_003096555.1 50S ribosomal protein L33 -
  CWI22_RS29405 (CWI22_29405) rpmB 6154537..6154773 (-) 237 WP_003096556.1 50S ribosomal protein L28 -
  CWI22_RS29410 (CWI22_29410) - 6155128..6156708 (+) 1581 WP_031631481.1 ABC transporter substrate-binding protein -
  CWI22_RS29415 (CWI22_29415) - 6156734..6157282 (+) 549 WP_031631484.1 hypothetical protein -
  CWI22_RS29420 (CWI22_29420) radC 6157299..6157973 (-) 675 WP_003096559.1 RadC family protein Machinery gene
  CWI22_RS29425 (CWI22_29425) coaBC 6158113..6159321 (+) 1209 WP_003098292.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CWI22_RS29430 (CWI22_29430) dut 6159329..6159784 (+) 456 WP_031757069.1 dUTP diphosphatase -
  CWI22_RS29435 (CWI22_29435) - 6159821..6162427 (+) 2607 WP_003457877.1 phosphomannomutase/phosphoglucomutase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24918.68 Da        Isoelectric Point: 7.2089

>NTDB_id=217038 CWI22_RS29420 WP_003096559.1 6157299..6157973(-) (radC) [Pseudomonas aeruginosa strain PB354]
MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRALLEADLASFCGHLGLGVAKYA
QLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVFACLFLDTRHRVLAFEVLFQGSIDGASVYPRQVVKR
TLAHNAAALILTHNHPSGDARPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=217038 CWI22_RS29420 WP_003096559.1 6157299..6157973(-) (radC) [Pseudomonas aeruginosa strain PB354]
ATGAGCATCCGCGATTGGCCCGAAGCCGAACGGCCTCGGGAGAAGCTTCTGGAGCAGGGCGCGGCGGCCCTTTCCGATGC
CGAGCTGTTGGCGATCTTCCTGCGCACGGGAGTGACCGGTTGCAGTGCGGTCGAGCTGTCGCGGCGGCTGTTGAGCGAGT
TCGGCGGGCTGCGTGCCCTGCTCGAGGCGGACCTCGCCTCGTTCTGCGGCCATCTCGGGCTCGGCGTGGCCAAGTACGCG
CAATTGCAGGCCGTGCTGGAGATGGGCCGGCGCCACCTGGCCGAGCGCCTGCGTCGCGATTCGATACTGGAGAGCCCGCA
GGCGGTGCGCGACTATCTCAAGGCGCGCCTGCGCCACGAGCAGCACGAGGTGTTCGCCTGCCTGTTCCTCGACACGAGGC
ACCGGGTCCTGGCGTTCGAGGTGCTGTTCCAGGGCAGCATCGACGGCGCCAGCGTCTACCCGCGCCAGGTGGTCAAGCGC
ACCCTGGCGCACAACGCGGCGGCGTTGATCCTGACCCATAACCACCCTTCCGGCGACGCCCGTCCGAGTCTCGCCGACCG
CCAGCTCACTGCGCGCCTCAAGGAAGCCTTGGCGCTCATCGACGTGCGGGTGCTCGACCACTTCATCATCGGCGACGGCG
AGCCGCTGTCGCTGGCCGAATACGGTTGGCTGTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02E43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.761

93.304

0.464
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

39.732

100

0.397