Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilC   Type   Machinery gene
Locus tag   NMA_RS14895 Genome accession   NC_003116
Coordinates   279084..279215 (+) Length   43 a.a.
NCBI ID   WP_306808038.1    Uniprot ID   -
Organism   Neisseria meningitidis Z2491     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 274084..284215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMA_RS01530 (NMA0290) msrAB 274600..276168 (-) 1569 WP_002216163.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  NMA_RS01535 (NMA0291) pilA 276314..277579 (+) 1266 WP_002247114.1 signal recognition particle-docking protein FtsY Machinery gene
  NMA_RS01540 (NMA0292) - 278168..278452 (+) 285 WP_002246543.1 GIY-YIG nuclease family protein -
  NMA_RS14895 pilC 279084..279215 (+) 132 WP_306808038.1 hypothetical protein Machinery gene
  NMA_RS01545 (NMA0293) pilC 279185..282250 (+) 3066 Protein_282 PilC family type IV pilus tip adhesin -

Sequence


Protein


Download         Length: 43 a.a.        Molecular weight: 5087.06 Da        Isoelectric Point: 12.9102

>NTDB_id=21670 NMA_RS14895 WP_306808038.1 279084..279215(+) (pilC) [Neisseria meningitidis Z2491]
MNKTWKRQVFRHTALYTAILMFSHTGGGGGRRKRKRKRINTLL

Nucleotide


Download         Length: 132 bp        

>NTDB_id=21670 NMA_RS14895 WP_306808038.1 279084..279215(+) (pilC) [Neisseria meningitidis Z2491]
ATGAATAAAACTTGGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATACCGCCATATTGATGTTTTCCCATACCGGCGG
GGGGGGGGGCAGGCGCAAGCGCAAACGCAAACGCATAAATACGCTATTGTAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

90

69.767

0.628


Multiple sequence alignment