Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   CWI26_RS05945 Genome accession   NZ_CP025043
Coordinates   1200475..1201173 (+) Length   232 a.a.
NCBI ID   WP_044980470.1    Uniprot ID   -
Organism   Streptococcus suis strain AH681     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1195475..1206173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI26_RS05920 (CWI26_05920) - 1195798..1196919 (-) 1122 WP_029178298.1 IS110 family transposase -
  CWI26_RS05925 (CWI26_05925) - 1197425..1198159 (-) 735 WP_044980473.1 ABC transporter permease -
  CWI26_RS05930 (CWI26_05930) - 1198156..1198911 (-) 756 WP_044675522.1 ABC transporter permease -
  CWI26_RS05935 (CWI26_05935) - 1198913..1199821 (-) 909 WP_044675520.1 ABC transporter ATP-binding protein -
  CWI26_RS11985 - 1199875..1200039 (-) 165 WP_153598978.1 hypothetical protein -
  CWI26_RS05940 (CWI26_05940) - 1200102..1200272 (-) 171 WP_044980471.1 lacticin 481 family lantibiotic -
  CWI26_RS05945 (CWI26_05945) scnR 1200475..1201173 (+) 699 WP_044980470.1 response regulator transcription factor Regulator
  CWI26_RS05950 (CWI26_05950) - 1201184..1202554 (+) 1371 WP_099810474.1 sensor histidine kinase -
  CWI26_RS05955 (CWI26_05955) - 1202646..1204511 (-) 1866 WP_100881382.1 SAG1250 family conjugative relaxase -
  CWI26_RS05960 (CWI26_05960) mobC 1204498..1204863 (-) 366 WP_024380649.1 plasmid mobilization relaxosome protein MobC -
  CWI26_RS05965 (CWI26_05965) - 1204873..1205232 (-) 360 WP_024380648.1 SAG1252 family conjugative relaxosome accessory protein -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26452.80 Da        Isoelectric Point: 5.4562

>NTDB_id=216616 CWI26_RS05945 WP_044980470.1 1200475..1201173(+) (scnR) [Streptococcus suis strain AH681]
MDIETPFLTRKILVVDDDIALNNSIREILSVSGFKKIYSAYSISEGIESFINNSIDLIILDVMLPDGKGYLLSKYVRKNS
DIPILFLTAKNEPEDEIQGLQSGGDDFVTKPFLPKILIYRIISLLRRSYKEDSNIIKLENCIINLGNAIVEKNNEKLSLT
PIEIQIVRKLYDNKNYIVSTEAICDTVWGIDSFGYEKSLMVHIRNIREKIELNPSKPQYLITVKGLGYKLMV

Nucleotide


Download         Length: 699 bp        

>NTDB_id=216616 CWI26_RS05945 WP_044980470.1 1200475..1201173(+) (scnR) [Streptococcus suis strain AH681]
ATGGATATAGAAACGCCTTTTTTAACTAGAAAAATATTGGTTGTTGATGATGATATTGCGTTAAACAATTCAATAAGGGA
GATACTATCAGTTTCTGGTTTCAAAAAAATATATAGTGCATACAGCATCAGTGAAGGAATAGAGTCTTTTATTAATAATT
CTATTGATTTGATTATATTAGATGTCATGCTTCCAGATGGGAAAGGATATTTACTATCAAAATACGTAAGAAAAAATTCT
GATATTCCAATTCTTTTTCTAACAGCAAAAAATGAACCTGAAGATGAAATTCAAGGGTTACAATCTGGAGGAGATGATTT
CGTGACTAAGCCTTTCCTTCCTAAAATTCTCATTTATCGCATAATTTCGCTTCTCCGTCGGTCGTACAAAGAAGACAGTA
ACATTATTAAATTAGAGAATTGCATTATTAATTTAGGAAATGCTATTGTTGAAAAAAATAATGAAAAACTTTCTTTAACC
CCAATAGAAATTCAAATCGTTCGGAAATTATATGATAATAAAAACTATATTGTATCTACAGAGGCGATTTGTGATACCGT
ATGGGGCATTGATAGTTTTGGATATGAAAAGTCTTTAATGGTCCATATCAGAAATATCAGAGAAAAAATCGAACTTAACC
CTTCAAAGCCACAATACTTAATTACTGTTAAAGGACTCGGCTATAAACTAATGGTATAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(12-120)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

43.946

96.121

0.422
  vicR Streptococcus mutans UA159

36.957

99.138

0.366