Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NMA_RS09680 Genome accession   NC_003116
Coordinates   1841085..1841549 (-) Length   154 a.a.
NCBI ID   WP_010981251.1    Uniprot ID   -
Organism   Neisseria meningitidis Z2491     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1836085..1846549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMA_RS09655 (NMA1909) - 1837369..1837641 (-) 273 WP_002234162.1 ACT domain-containing protein -
  NMA_RS09660 (NMA1911) - 1837767..1838504 (-) 738 WP_002216708.1 toxin-antitoxin system YwqK family antitoxin -
  NMA_RS09665 (NMA1912) prmB 1838785..1839684 (-) 900 WP_002235090.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  NMA_RS09670 (NMA1913) - 1839829..1840422 (+) 594 WP_002247029.1 hypothetical protein -
  NMA_RS09675 (NMA1914) - 1840534..1840971 (+) 438 Protein_1827 HK97 family phage prohead protease -
  NMA_RS09680 (NMA1915) comE 1841085..1841549 (-) 465 WP_010981251.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16457.69 Da        Isoelectric Point: 10.7894

>NTDB_id=21658 NMA_RS09680 WP_010981251.1 1841085..1841549(-) (comE) [Neisseria meningitidis Z2491]
MLCPEKMSGMAGQYPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPALPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=21658 NMA_RS09680 WP_010981251.1 1841085..1841549(-) (comE) [Neisseria meningitidis Z2491]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACAGTATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGTGCGCCCGCACCAAAAGGCCCGGCAAAACCGGCTCTGCCCGCAGCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment