Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   NMA_RS04555 Genome accession   NC_003116
Coordinates   883784..884587 (-) Length   267 a.a.
NCBI ID   WP_002221259.1    Uniprot ID   Q9JVB7
Organism   Neisseria meningitidis Z2491     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 878784..889587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMA_RS04550 (NMA0906) comA 881507..883726 (+) 2220 WP_153063192.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NMA_RS04555 (NMA0907) comL 883784..884587 (-) 804 WP_002221259.1 outer membrane protein assembly factor BamD Machinery gene
  NMA_RS04560 (NMA0908) rluD 884586..885710 (+) 1125 WP_002246859.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NMA_RS04565 (NMA0909) - 885863..886810 (-) 948 WP_002246064.1 bile acid:sodium symporter family protein -
  NMA_RS15045 - 887029..887202 (-) 174 Protein_866 IS5/IS1182 family transposase -
  NMA_RS04570 (NMA0911) pgeF 887369..888148 (+) 780 WP_002246066.1 peptidoglycan editing factor PgeF -
  NMA_RS04575 (NMA0912) lptE 888200..888679 (+) 480 WP_002214127.1 LPS assembly lipoprotein LptE -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30808.83 Da        Isoelectric Point: 8.9351

>NTDB_id=21641 NMA_RS04555 WP_002221259.1 883784..884587(-) (comL) [Neisseria meningitidis Z2491]
MKKILLTVSLGLALSACATQGTVDKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAY
AYYKDDEKDKALAAIERFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMVKLVDALGGNEMSVARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESLAILELAYQKLGKPQLAADTRRV
LETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=21641 NMA_RS04555 WP_002221259.1 883784..884587(-) (comL) [Neisseria meningitidis Z2491]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACTCAAGGTACGGTCGATAAAGATGC
CCAGATTACCCAAGATTGGAGTGTGGAGAAGCTCTATGCCGAAGCCCAGGACGAGCTGAACAGCAGCAATTATACGCGGG
CTGTCAAGTTATACGAAATCTTGGAATCGCGCTTCCCCACCAGCCGCCATGCCCGGCAGTCGCAACTGGATACCGCATAC
GCCTATTATAAAGACGATGAAAAAGACAAAGCTCTGGCGGCAATCGAACGCTTCCGCCGCCTTCACCCGCAACACCCGAA
TATGGATTACGCGCTGTATCTGCGCGGCTTGGTGCTGTTCAACGAAGACCAGTCCTTCCTGAACAAACTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTACCAGGCGTTTGCGGAACTCGTCCAACGCTTCCCCAACAGC
AAATACGCCGCCGATGCGACCGCACGCATGGTCAAACTGGTCGATGCACTGGGCGGCAATGAAATGTCGGTGGCGCGCTA
CTACATGAAACGCGGCGCATATATCGCCGCCGCCAACCGCGCCCAAAAAATTATCGGCAGCTACCAAAATACACGCTATG
TCGAAGAATCGCTCGCCATCTTGGAACTTGCCTACCAAAAACTCGGCAAACCACAGCTTGCCGCCGATACGCGCCGCGTG
TTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCTTGGCAGCCCGACGATATGCCTTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JVB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

98.502

100

0.985
  comL Neisseria meningitidis MC58

96.255

100

0.963

Multiple sequence alignment