Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   NMA_RS03290 Genome accession   NC_003116
Coordinates   637892..638437 (-) Length   181 a.a.
NCBI ID   WP_002214522.1    Uniprot ID   Q7DD77
Organism   Neisseria meningitidis Z2491     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 632892..643437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMA_RS03280 (NMA0648) - 633914..634426 (-) 513 WP_002222978.1 shikimate kinase -
  NMA_RS03285 (NMA0650) pilQ 635588..637873 (-) 2286 WP_002219789.1 type IV pilus secretin PilQ Machinery gene
  NMA_RS03290 (NMA0651) pilP 637892..638437 (-) 546 WP_002214522.1 pilus assembly protein PilP Machinery gene
  NMA_RS03295 (NMA0652) - 638455..639102 (-) 648 WP_002217908.1 type 4a pilus biogenesis protein PilO -
  NMA_RS03300 (NMA0653) pilN 639103..639702 (-) 600 WP_002214520.1 PilN domain-containing protein Machinery gene
  NMA_RS03305 (NMA0654) pilM 639705..640820 (-) 1116 WP_010981112.1 type IV pilus biogenesis protein PilM -
  NMA_RS03310 (NMA0655) - 640972..643368 (+) 2397 WP_002219786.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20067.55 Da        Isoelectric Point: 4.6512

>NTDB_id=21635 NMA_RS03290 WP_002214522.1 637892..638437(-) (pilP) [Neisseria meningitidis Z2491]
MKHYALLISFLALSACSQGSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETDKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIVLNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=21635 NMA_RS03290 WP_002214522.1 637892..638437(-) (pilP) [Neisseria meningitidis Z2491]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAGGTTCTGAGGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCACAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGACAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCTGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCGTCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2IVW
  PDB 4AV2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

100

100

1

Multiple sequence alignment