Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   BWR56_RS08835 Genome accession   NZ_CP019562
Coordinates   1785978..1786931 (-) Length   317 a.a.
NCBI ID   WP_049505567.1    Uniprot ID   -
Organism   Streptococcus oralis strain S.MIT/ORALIS-351     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1780978..1791931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWR56_RS08810 (BWR56_1744) - 1781734..1782357 (-) 624 WP_076984829.1 ribonuclease P -
  BWR56_RS08815 (BWR56_1745) jag 1782413..1783399 (-) 987 WP_070657909.1 RNA-binding cell elongation regulator Jag/EloR -
  BWR56_RS08820 (BWR56_1746) - 1783414..1784241 (-) 828 WP_000728097.1 membrane protein insertase YidC -
  BWR56_RS08825 (BWR56_1747) rnpA 1784216..1784587 (-) 372 WP_000748120.1 ribonuclease P protein component -
  BWR56_RS08830 (BWR56_1748) - 1784737..1785927 (-) 1191 WP_049505568.1 acetate kinase -
  BWR56_RS08835 (BWR56_1749) comYH 1785978..1786931 (-) 954 WP_049505567.1 class I SAM-dependent methyltransferase Machinery gene
  BWR56_RS08840 (BWR56_1750) - 1786990..1787580 (-) 591 WP_049505566.1 class I SAM-dependent methyltransferase -
  BWR56_RS08845 (BWR56_1751) comGG/cglG 1787613..1788026 (-) 414 WP_049505565.1 competence type IV pilus minor pilin ComGG Machinery gene
  BWR56_RS08850 (BWR56_1752) comGF/cglF 1788004..1788465 (-) 462 WP_049505564.1 competence type IV pilus minor pilin ComGF Machinery gene
  BWR56_RS08855 (BWR56_1753) comGE/cglE 1788428..1788730 (-) 303 WP_192832458.1 competence type IV pilus minor pilin ComGE Machinery gene
  BWR56_RS08860 (BWR56_1754) comGD/cglD 1788693..1789127 (-) 435 WP_049505563.1 competence type IV pilus minor pilin ComGD Machinery gene
  BWR56_RS08865 (BWR56_1755) comGC/cglC 1789090..1789413 (-) 324 WP_000735800.1 competence type IV pilus major pilin ComGC Machinery gene
  BWR56_RS08870 (BWR56_1756) comGB/cglB 1789415..1790431 (-) 1017 WP_076984831.1 competence type IV pilus assembly protein ComGB Machinery gene
  BWR56_RS08875 (BWR56_1757) comGA/cglA/cilD 1790379..1791320 (-) 942 WP_049505562.1 competence type IV pilus ATPase ComGA Machinery gene
  BWR56_RS08880 (BWR56_1758) - 1791390..1791755 (-) 366 WP_000286399.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35637.67 Da        Isoelectric Point: 4.2013

>NTDB_id=216346 BWR56_RS08835 WP_049505567.1 1785978..1786931(-) (comYH) [Streptococcus oralis strain S.MIT/ORALIS-351]
MDFEKIEQAYTYLLENVQVIQSDLVTNFYDALVEQNSIYLDGETELEQVKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAISLLLVLVVEELFKQEEISILEIGSGMGILGATFLTSLSKKVDYLGIEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAIASRYQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKGWLKDEVSLAAIIALPEDIFSTANQAKSIFVLQKKRDKEIEPFVYPLTSLQDPSVLLTFKENFQNWSKGNEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=216346 BWR56_RS08835 WP_049505567.1 1785978..1786931(-) (comYH) [Streptococcus oralis strain S.MIT/ORALIS-351]
ATGGATTTTGAAAAAATTGAACAAGCTTATACGTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGTGACCAA
CTTTTATGACGCCTTGGTAGAGCAAAACAGCATCTATTTGGATGGCGAGACCGAACTAGAGCAGGTCAAGGAGAACAATC
AAGCCCTTAAACGCTTAGCGCTTCGCAAGGAAGAGTGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCAGGACAAACG
GAACCTTTACAGGCCAATCACCAGTTTACACCGGATGCCATTTCCCTCCTCTTGGTACTTGTTGTAGAAGAGTTGTTTAA
ACAAGAGGAAATTAGCATCCTCGAAATCGGTTCTGGTATGGGGATTTTGGGGGCTACTTTCTTGACTTCTCTCTCTAAAA
AAGTAGATTACTTGGGAATCGAAGTGGATGACTTGCTGATTGATTTGGCAGCCAGTATGGCAGATGTGATTGGTTTGCAA
GCTGGTTTTGTCCAAGGAGACGCCGTTCGTCCGCAAATGCTTAAAGAAAGCGACGTGGTCATCAGCGACTTGCCTGTTGG
TTATTACCCAGACGATGCCATCGCTTCGCGCTATCAAGTGGCTTCTAGTCAAGAGCATACCTATGCCCATCATTTGCTGA
TGGAACAAGGCCTCAAGTACCTTAAGTCTGATGGCTATGCTATTTTTCTAGCTCCGAGTGATTTATTGACCAGTCCTCAA
AGTGACTTATTAAAAGGGTGGCTCAAAGACGAAGTGAGTCTGGCTGCTATCATCGCTCTGCCAGAGGATATTTTCTCAAC
TGCAAACCAAGCTAAAAGTATTTTTGTCTTACAGAAGAAAAGAGACAAGGAAATAGAACCCTTTGTCTACCCTCTTACTA
GCTTGCAAGATCCGTCAGTTTTGTTGACCTTTAAAGAAAATTTTCAAAATTGGAGCAAAGGTAATGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

57.778

99.369

0.574
  comYH Streptococcus mutans UA159

57.46

99.369

0.571

Multiple sequence alignment