Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   BWR56_RS06890 Genome accession   NZ_CP019562
Coordinates   1420920..1422152 (-) Length   410 a.a.
NCBI ID   WP_076984712.1    Uniprot ID   -
Organism   Streptococcus oralis strain S.MIT/ORALIS-351     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1415920..1427152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWR56_RS06860 (BWR56_1360) - 1416109..1417077 (+) 969 WP_076984711.1 NAD(P)/FAD-dependent oxidoreductase -
  BWR56_RS06865 (BWR56_1361) whiA 1417110..1418021 (-) 912 WP_049505290.1 DNA-binding protein WhiA -
  BWR56_RS06870 (BWR56_1362) - 1418018..1418995 (-) 978 WP_049505289.1 YvcK family protein -
  BWR56_RS06875 (BWR56_1363) rapZ 1418992..1419882 (-) 891 WP_000163046.1 RNase adapter RapZ -
  BWR56_RS06880 (BWR56_1364) - 1419934..1420314 (-) 381 WP_001140423.1 RidA family protein -
  BWR56_RS06885 (BWR56_1365) yihA 1420324..1420911 (-) 588 WP_000405196.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  BWR56_RS06890 (BWR56_1366) clpX 1420920..1422152 (-) 1233 WP_076984712.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  BWR56_RS06900 (BWR56_1368) - 1422354..1422860 (-) 507 WP_000162310.1 dihydrofolate reductase -
  BWR56_RS06905 (BWR56_1369) cmk 1422979..1423653 (-) 675 WP_076984713.1 (d)CMP kinase -
  BWR56_RS06910 (BWR56_1370) - 1423663..1424169 (-) 507 WP_076984714.1 SAG1386/EF1546 family surface-associated protein -
  BWR56_RS06915 - 1424215..1424418 (+) 204 WP_002874767.1 ferredoxin -
  BWR56_RS06920 (BWR56_1371) - 1424494..1425459 (-) 966 WP_076984901.1 glycosyltransferase family 2 protein -
  BWR56_RS06925 (BWR56_1372) galE 1425461..1426480 (-) 1020 WP_049505285.1 UDP-glucose 4-epimerase GalE -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45670.24 Da        Isoelectric Point: 4.4581

>NTDB_id=216330 BWR56_RS06890 WP_076984712.1 1420920..1422152(-) (clpX) [Streptococcus oralis strain S.MIT/ORALIS-351]
MPTNRKNDMMVYCSFCGKSQEEVKKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
RNILFIVGGACDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTEKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=216330 BWR56_RS06890 WP_076984712.1 1420920..1422152(-) (clpX) [Streptococcus oralis strain S.MIT/ORALIS-351]
ATGCCTACAAATAGGAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAGCCAAGAAGAAGTAAAGAAAATAAT
CGCTGGGAACAACGCCTTTATCTGTAATGAATGTGTGGAGTTGGCCCAGGAAATCATTCGGGAGGAGTTGGCCGAGGAAG
TTTTGGCAGACTTGTCTGAAGTACCAAAACCAATCGAACTCCTCAATATCTTAAACCACTATGTGATTGGTCAAGATCGT
GCCAAACGTGCCTTGGCAGTGGCTGTTTACAACCACTACAAACGCATCAATTTCCACGATACGCGTGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAACATCTTGATGATTGGCCCAACTGGTTCAGGGAAAACTTTCTTGGCTCAGACTTTGGCTA
AGAGCTTGAACGTGCCTTTCGCTATTGCAGATGCAACAGCTCTTACTGAGGCTGGTTATGTAGGTGAGGACGTGGAAAAT
ATCCTCCTCAAACTCTTGCAGGCTGCTGACTTTAACATCGAACGTGCAGAACGTGGGATTATCTACGTAGATGAAATTGA
TAAGATTGCCAAGAAGAGCGAGAACGTCTCTATCACACGTGACGTTTCGGGTGAAGGGGTGCAACAAGCCCTTCTCAAGA
TTATCGAGGGAACTGTCGCTAGTGTACCACCTCAAGGTGGACGCAAACATCCACAACAAGAGATGATTCAGGTAGATACC
AGGAATATCCTCTTCATCGTGGGTGGTGCTTGTGATGGTATCGAAGAAATCGTTAAACAACGTCTGGGTGAAAAAGTCAT
CGGTTTCGGCCAAAATAACAAGGCGATTGATGAAAACAGCTCCTACATGCAAGAAATTATCGCAGAGGATATTCAAAAAT
TCGGTATTATCCCTGAGTTGATTGGACGCTTGCCTGTCTTTGCTGCTCTTGAGCAATTGACGGTCGATGACTTGGTTCGC
ATCTTGAAAGAACCAAGAAATGCCTTGGTGAAACAATACCAAACCTTGCTTTCTTATGATGATGTTGAGTTGGAATTTGA
CGATGAAGCCCTTCAAGAAATCGCCAATAAGGCTATCGAACGCAAAACGGGTGCGCGTGGTCTTCGCTCAATCATCGAAG
AAACCATGCTAGACGTTATGTTTGAGGTACCAAGTCAGGAAAATGTGAAATTGGTCCGCATCACGAAAGAAGCTGTCGAT
GGAACGGAAAAACCAATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.585

100

0.866
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.214

98.049

0.561

Multiple sequence alignment