Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilA   Type   Machinery gene
Locus tag   NMA_RS01535 Genome accession   NC_003116
Coordinates   276314..277579 (+) Length   421 a.a.
NCBI ID   WP_002247114.1    Uniprot ID   P57010
Organism   Neisseria meningitidis Z2491     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 271314..282579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMA_RS01515 (NMA0287) - 272044..273045 (+) 1002 WP_002220087.1 thiamine ABC transporter substrate-binding protein -
  NMA_RS01520 (NMA0288) - 273139..273987 (+) 849 WP_002218471.1 mechanosensitive ion channel family protein -
  NMA_RS01525 (NMA0289) - 274013..274498 (+) 486 WP_002215245.1 CinA family protein -
  NMA_RS01530 (NMA0290) msrAB 274600..276168 (-) 1569 WP_002216163.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  NMA_RS01535 (NMA0291) pilA 276314..277579 (+) 1266 WP_002247114.1 signal recognition particle-docking protein FtsY Machinery gene
  NMA_RS01540 (NMA0292) - 278168..278452 (+) 285 WP_002246543.1 GIY-YIG nuclease family protein -
  NMA_RS14895 pilC 279084..279215 (+) 132 WP_306808038.1 hypothetical protein Machinery gene
  NMA_RS01545 (NMA0293) pilC 279185..282250 (+) 3066 Protein_282 PilC family type IV pilus tip adhesin -

Sequence


Protein


Download         Length: 421 a.a.        Molecular weight: 45115.41 Da        Isoelectric Point: 4.5557

>NTDB_id=21627 NMA_RS01535 WP_002247114.1 276314..277579(+) (pilA) [Neisseria meningitidis Z2491]
MFSFFRRKKKQETPALEEAQIQETAAKAESETAQVIENIKEDAESLAESVKGQVESAVETVSGAVEQVKEAVAEMLSEAE
EAAEKAAEQVEAAKEAIAETVGEAVGQVQEAVATTEEHKLGWAARLKQGLTKSRDKMAKSLAGVFGGGQIDEDLYEELET
VLITSDMGMEATEYLMKDVRDRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGK
LAKYFQAQGKSVLLAAGDTFRAAAREQLQAWGERNNVTVISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRLPTQLHL
MEEIKKVKRVLQKAMPDAPHEIIVVLDANIGQNAVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGV
GEGIDDLRPFDARAFVDALLD

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=21627 NMA_RS01535 WP_002247114.1 276314..277579(+) (pilA) [Neisseria meningitidis Z2491]
ATGTTCAGCTTCTTCCGTCGCAAGAAAAAACAGGAAACGCCGGCTCTCGAGGAGGCTCAAATTCAGGAAACCGCAGCAAA
AGCAGAGTCCGAAACCGCTCAAGTAATTGAAAATATTAAAGAAGATGCTGAATCTTTAGCAGAAAGCGTCAAAGGGCAGG
TCGAATCGGCTGTTGAAACCGTCAGCGGTGCGGTTGAACAAGTAAAGGAAGCCGTTGCCGAGATGCTGTCTGAAGCAGAG
GAAGCGGCGGAAAAAGCAGCGGAACAAGTCGAAGCGGCAAAAGAAGCCATTGCCGAAACCGTCGGCGAGGCTGTCGGGCA
AGTTCAAGAAGCCGTTGCAACAACTGAAGAACACAAGCTCGGTTGGGCGGCGCGTTTGAAACAAGGTTTGACCAAATCGC
GCGACAAAATGGCGAAATCGCTGGCGGGCGTGTTCGGCGGCGGACAAATCGACGAAGATTTGTACGAAGAGCTGGAAACC
GTGCTGATTACCAGCGACATGGGCATGGAAGCCACCGAATACCTGATGAAAGACGTGCGCGACCGCGTCAGCCTCAAAGG
GCTGAAAGACGGCAACGAATTGCGCGGCGCGCTGAAAGAAGCCTTGTACGACCTGATTAAGCCTCTAGAGAAACCGCTGG
TTTTGCCCGAAACCAAAGAGCCGTTTGTCATCATGCTTGCCGGCATCAACGGCGCGGGCAAAACCACATCCATCGGCAAA
CTCGCCAAATATTTCCAAGCGCAGGGCAAATCTGTGCTGCTTGCCGCCGGCGATACTTTCCGCGCCGCCGCGCGTGAGCA
GCTTCAAGCTTGGGGCGAACGCAACAACGTTACCGTGATTTCGCAAACCACAGGCGATTCCGCCGCCGTTTGTTTTGATG
CCGTCCAAGCCGCCAAAGCGCGCGGCATCGACATTGTGCTTGCCGACACCGCCGGCCGCCTGCCCACGCAGCTTCATTTG
ATGGAAGAAATCAAAAAAGTGAAACGCGTGCTGCAAAAAGCCATGCCCGACGCGCCGCACGAAATCATCGTCGTGCTTGA
TGCCAACATCGGGCAAAACGCCGTCAACCAAGTCAAAGCCTTTGACGACGCATTAGGGCTGACCGGTTTAATCGTGACCA
AACTCGACGGCACGGCAAAAGGCGGCATCCTCGCCGCGCTTGCTTCCGACCGCCCCGTCCCCGTCCGCTATATCGGCGTG
GGCGAAGGCATAGACGATTTGCGCCCGTTTGACGCGCGCGCGTTTGTGGACGCACTGCTGGATTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB P57010

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

93.824

100

0.938


Multiple sequence alignment