Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   CFP59_RS39400 Genome accession   NZ_CP025018
Coordinates   9516568..9517233 (+) Length   221 a.a.
NCBI ID   WP_069871518.1    Uniprot ID   -
Organism   Streptomyces sp. M56     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 9511568..9522233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFP59_RS39380 (CFP59_07788) - 9511694..9513055 (-) 1362 WP_100808068.1 dipeptidase -
  CFP59_RS39385 (CFP59_07789) - 9513225..9514430 (+) 1206 WP_100808069.1 geranylgeranyl reductase family protein -
  CFP59_RS39390 - 9514790..9515104 (-) 315 WP_197710460.1 hypothetical protein -
  CFP59_RS39395 (CFP59_07791) - 9515225..9516520 (+) 1296 WP_231981833.1 sensor histidine kinase -
  CFP59_RS39400 (CFP59_07792) vraR 9516568..9517233 (+) 666 WP_069871518.1 response regulator transcription factor Regulator
  CFP59_RS39405 (CFP59_07793) - 9517268..9518176 (-) 909 WP_100808071.1 DUF2797 domain-containing protein -
  CFP59_RS39410 (CFP59_07794) - 9518176..9518448 (-) 273 WP_100808072.1 DUF6332 family protein -
  CFP59_RS39415 (CFP59_07795) - 9518455..9518964 (-) 510 WP_100808073.1 DUF4442 domain-containing protein -
  CFP59_RS39420 (CFP59_07796) - 9519033..9519767 (-) 735 WP_100808074.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  CFP59_RS39425 (CFP59_07797) - 9519823..9521244 (-) 1422 WP_100808075.1 MFS transporter -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23758.52 Da        Isoelectric Point: 4.8604

>NTDB_id=216130 CFP59_RS39400 WP_069871518.1 9516568..9517233(+) (vraR) [Streptomyces sp. M56]
MIRVALADDQSLVRAGFHALLAAQPDIEVVGQAADGEQALALVREQRPDVVLMDIRMPVLDGLAATRGITGDPALGEVKV
IMLTTFELDEYVFEAIRSGASGFLVKDTEPEELLRAVRAVVGGDALLSPGVTRRLIAEFAARSREPAPAEALAELTERER
EVMALVGMGLSNQEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLVRPGWLG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=216130 CFP59_RS39400 WP_069871518.1 9516568..9517233(+) (vraR) [Streptomyces sp. M56]
GTGATCCGCGTGGCGCTCGCCGATGACCAGAGCCTCGTCCGCGCCGGTTTCCACGCCCTGCTGGCCGCGCAGCCGGATAT
CGAGGTGGTCGGCCAGGCGGCCGACGGGGAGCAGGCGCTGGCGCTCGTACGGGAGCAACGTCCCGATGTCGTCCTCATGG
ACATCCGCATGCCGGTGCTCGACGGCCTCGCCGCGACCCGCGGGATCACCGGGGACCCGGCCCTCGGCGAGGTAAAGGTG
ATCATGCTGACCACCTTCGAACTCGATGAGTACGTCTTCGAGGCGATTCGCTCCGGCGCCTCCGGCTTTCTGGTCAAGGA
CACCGAACCGGAGGAGCTGCTGCGGGCGGTGCGCGCGGTCGTCGGCGGCGACGCGCTGTTGTCGCCCGGGGTGACCCGCC
GCCTCATCGCCGAGTTCGCGGCCCGCTCCAGGGAACCCGCGCCCGCGGAGGCGCTGGCGGAGCTGACCGAGCGGGAGCGG
GAGGTGATGGCACTGGTCGGCATGGGGCTGTCGAACCAGGAGATCGCCCGGCGGCTCGTGGTCAGCCCGCTCACCGCCAA
GACCCATGTGAGCCGCACGATGGTCAAGCTCGGCGCCCGGGACCGCGCCCAACTCGTCGTACTCGCCTATGAGTCGGGCC
TGGTCCGGCCGGGGTGGCTGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.605

97.285

0.376
  degU Bacillus subtilis subsp. subtilis str. 168

36

100

0.367