Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   CFP59_RS34810 Genome accession   NZ_CP025018
Coordinates   8376125..8376766 (+) Length   213 a.a.
NCBI ID   WP_100807628.1    Uniprot ID   -
Organism   Streptomyces sp. M56     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8371125..8381766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFP59_RS34800 (CFP59_06889) - 8373757..8374527 (-) 771 WP_093702970.1 transglycosylase SLT domain-containing protein -
  CFP59_RS34805 (CFP59_06890) - 8374969..8376132 (+) 1164 WP_173963315.1 GAF domain-containing sensor histidine kinase -
  CFP59_RS34810 (CFP59_06891) vraR 8376125..8376766 (+) 642 WP_100807628.1 response regulator transcription factor Regulator
  CFP59_RS34815 (CFP59_06892) - 8376905..8377144 (+) 240 WP_033227481.1 chaplin -
  CFP59_RS34820 (CFP59_06893) - 8377297..8378100 (-) 804 WP_069874683.1 hypothetical protein -
  CFP59_RS34825 (CFP59_06894) - 8378211..8379002 (+) 792 WP_069874706.1 ABC transporter ATP-binding protein -
  CFP59_RS34830 (CFP59_06895) - 8379052..8379525 (+) 474 WP_069874685.1 NfeD family protein -
  CFP59_RS34835 (CFP59_06896) - 8379678..8380640 (+) 963 WP_100807629.1 SPFH domain-containing protein -
  CFP59_RS34840 (CFP59_06897) - 8380726..8381229 (-) 504 WP_100809429.1 HNH endonuclease -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23102.47 Da        Isoelectric Point: 6.0344

>NTDB_id=216124 CFP59_RS34810 WP_100807628.1 8376125..8376766(+) (vraR) [Streptomyces sp. M56]
MADPGRIRVLLVDDHQVVRRGLRTFLQVQDDIEVVGEAADGEEGVARAEELRPDVVLMDVKMPGLGGIEALRTLRDLDNP
ARVLVVTSFTEKRTVVPALRAGAAGYVYKDVDPEALARAIRSVHSGHVLLQPEVALALLSQEEGGGQGRGSLTEREREVL
ALIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHGIGA

Nucleotide


Download         Length: 642 bp        

>NTDB_id=216124 CFP59_RS34810 WP_100807628.1 8376125..8376766(+) (vraR) [Streptomyces sp. M56]
GTGGCTGACCCGGGACGGATTCGGGTGCTGCTCGTCGACGACCACCAGGTGGTGCGGCGCGGCCTGCGGACCTTCCTTCA
GGTCCAGGACGACATCGAGGTGGTCGGCGAGGCGGCGGACGGCGAGGAGGGTGTCGCCCGCGCCGAGGAGCTGCGTCCCG
ATGTCGTCCTGATGGATGTGAAGATGCCCGGCCTGGGCGGTATCGAGGCGCTGCGCACCCTGCGCGACCTCGACAACCCC
GCCCGGGTGCTGGTCGTGACCAGCTTCACCGAGAAGCGCACCGTGGTCCCCGCCCTGCGCGCGGGCGCCGCGGGCTATGT
CTACAAGGACGTGGACCCCGAGGCGCTCGCCCGCGCCATCCGGTCCGTCCACTCCGGGCATGTGCTGCTCCAGCCCGAGG
TGGCCCTCGCGCTGCTCTCCCAGGAGGAGGGCGGCGGTCAGGGGCGCGGCTCGCTCACCGAGCGCGAACGCGAGGTGCTC
GCGCTGATCGCGGACGGCCGGTCCAACCGGGAGATCGCCCGAGCGCTGGTGCTGTCCGAAAAAACCGTGAAAACCCATGT
GTCCAACATTCTGATGAAGTTGGACCTCTCCGACCGCACCCAGGCCGCGCTATGGGCGGTACGGCACGGAATCGGGGCAT
GA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(151-206)

Response regulator receiver domain (Response_reg)

(9-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.631

96.714

0.441
  degU Bacillus subtilis subsp. subtilis str. 168

37.838

100

0.394