Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   CFP59_RS25425 Genome accession   NZ_CP025018
Coordinates   6086870..6087559 (-) Length   229 a.a.
NCBI ID   WP_037955385.1    Uniprot ID   A0ABN1WZB4
Organism   Streptomyces sp. M56     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6081870..6092559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFP59_RS25400 (CFP59_05011) - 6082119..6082475 (+) 357 WP_069860932.1 PRC-barrel domain-containing protein -
  CFP59_RS49715 (CFP59_05012) - 6082521..6082691 (+) 171 WP_167459922.1 hypothetical protein -
  CFP59_RS25410 (CFP59_05013) - 6082688..6083881 (+) 1194 WP_100806870.1 glycosyl hydrolase family 8 -
  CFP59_RS25415 (CFP59_05014) - 6083866..6084867 (-) 1002 WP_100806871.1 polyprenyl synthetase family protein -
  CFP59_RS51895 (CFP59_05015) - 6084939..6086873 (-) 1935 WP_159398934.1 GAF domain-containing protein -
  CFP59_RS25425 (CFP59_05016) vraR 6086870..6087559 (-) 690 WP_037955385.1 response regulator transcription factor Regulator
  CFP59_RS25430 (CFP59_05017) - 6087565..6088263 (-) 699 WP_093701660.1 phosphatase PAP2 family protein -
  CFP59_RS25435 (CFP59_05018) - 6088533..6089222 (-) 690 WP_069860925.1 response regulator transcription factor -
  CFP59_RS25440 (CFP59_05019) - 6089219..6091126 (-) 1908 WP_069860924.1 PAS domain S-box protein -
  CFP59_RS25445 (CFP59_05020) - 6091129..6091473 (-) 345 WP_231981390.1 hypothetical protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 24603.31 Da        Isoelectric Point: 5.1287

>NTDB_id=216094 CFP59_RS25425 WP_037955385.1 6086870..6087559(-) (vraR) [Streptomyces sp. M56]
MALRVLIADDHAVVRQGLRMILGLDNDIKVVGETTNGREAVRLARELCPDVVLMDLLMPVMDGVSATAEIRQDLPEVEVV
ALTSSLDDAMVMGAVRAGAIGFLLKNAEADDLRNAVKAAAAGQIHVSPAAISRLMGQVREPSGPEQLTERETEVLTMLAR
GKANKEIAHDLRIGQQTVKTYVSHILTKLGVHSRTQAAVYAVQSGLVPAGELTPPEAVESTTREQWWSA

Nucleotide


Download         Length: 690 bp        

>NTDB_id=216094 CFP59_RS25425 WP_037955385.1 6086870..6087559(-) (vraR) [Streptomyces sp. M56]
GTGGCGCTTCGCGTGCTGATCGCAGACGACCATGCGGTGGTCCGGCAGGGCCTGCGCATGATCCTTGGCCTCGACAACGA
CATCAAGGTGGTCGGCGAGACCACCAACGGCCGGGAAGCCGTGCGGCTGGCCCGGGAGCTGTGCCCCGACGTCGTCCTGA
TGGATCTGCTGATGCCGGTGATGGACGGCGTATCGGCCACGGCGGAGATCCGCCAGGACCTCCCCGAGGTCGAGGTGGTG
GCGCTGACCAGCTCCCTCGACGACGCCATGGTCATGGGCGCGGTCCGGGCGGGGGCCATCGGCTTCCTGCTGAAGAACGC
CGAGGCCGACGACCTCCGCAACGCGGTGAAGGCCGCGGCCGCGGGCCAGATCCATGTCTCACCCGCCGCGATCTCCCGGC
TGATGGGCCAGGTCAGGGAGCCGAGCGGCCCGGAGCAGCTCACCGAGCGGGAGACCGAGGTCCTGACCATGCTCGCGCGC
GGCAAGGCCAACAAGGAGATCGCCCACGATCTGCGGATCGGCCAGCAGACGGTGAAGACGTATGTGAGCCACATCCTGAC
CAAGCTGGGGGTGCACAGCCGGACCCAGGCGGCGGTCTACGCGGTGCAGTCCGGCCTGGTACCGGCAGGTGAGCTCACCC
CTCCGGAAGCAGTCGAGTCGACGACGAGGGAGCAGTGGTGGTCGGCGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(146-201)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.75

90.83

0.397
  degU Bacillus subtilis subsp. subtilis str. 168

38.117

97.38

0.371