Detailed information NTG0216093

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BZG29_RS05735
• Genome accession: NZ_CP019510
• Coordinates: 1279871..1280740 (-)
• Length: 289 a.a.
• NCBI ID: WP_077408974.1
• Uniprot ID: -
• Organism: Janthinobacterium sp. LM6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1274871..1285740

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BZG29_RS05700 (BZG29_05710)	-	1275968..1276849 (+)	882	WP_077399884.1	ATP-binding protein	-
BZG29_RS05705 (BZG29_05715)	-	1276846..1277268 (+)	423	WP_077399887.1	NUDIX domain-containing protein	-
BZG29_RS05710 (BZG29_05720)	-	1277389..1277598 (+)	210	WP_077399890.1	hypothetical protein	-
BZG29_RS05715 (BZG29_05725)	-	1277605..1278021 (+)	417	WP_077399893.1	PIN domain-containing protein	-
BZG29_RS05720 (BZG29_05730)	yacG	1278164..1278355 (-)	192	WP_034748814.1	DNA gyrase inhibitor YacG	-
BZG29_RS05725 (BZG29_05735)	zapD	1278374..1279129 (-)	756	WP_077399896.1	cell division protein ZapD	-
BZG29_RS05730 (BZG29_05740)	coaE	1279192..1279839 (-)	648	WP_077399899.1	dephospho-CoA kinase	-
BZG29_RS05735 (BZG29_05745)	pilD	1279871..1280740 (-)	870	WP_077408974.1	A24 family peptidase	Machinery gene
BZG29_RS05740 (BZG29_05750)	-	1280847..1282043 (-)	1197	WP_077399902.1	type II secretion system F family protein	-
BZG29_RS05745 (BZG29_05755)	-	1282117..1283589 (-)	1473	WP_253192789.1	DHA2 family efflux MFS transporter permease subunit	-
BZG29_RS05750 (BZG29_05760)	-	1283794..1284948 (+)	1155	WP_077399905.1	hypothetical protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31026.82 Da
• Isoelectric Point: 7.3207

>NTDB_id=216093 BZG29_RS05735 WP_077408974.1 1279871..1280740(-) (pilD) [Janthinobacterium sp. LM6]
MLQDTLLFAAPGNLPVTLVAALFGLIVGSFLNVVIHRVPKMMQRESDNYVAEESGLPLPHTDRYNLMLPHSNCTACGHRI
TAMENIPVVSYLLLRGKCSACQAPISVRYPLVELLTGALSALLVWHFGSGWTGLATLVFAWLLIAMTFIDADTQMLPDDL
TFPLLWAGLLININGTFVPLQDAVIGAAAGYLALWAVYWAFKLATGKEGMGYGDFKLLAALGAWLGWTMLPTIILLSSLV
GAVVGIGLIVFAKRGRDKPIPFGPYLAAAGLIALLYGTPLSRLTLGLTS

Nucleotide

• Length: 870 bp

>NTDB_id=216093 BZG29_RS05735 WP_077408974.1 1279871..1280740(-) (pilD) [Janthinobacterium sp. LM6]
ATGCTGCAAGATACCCTGCTGTTCGCCGCGCCCGGCAATCTGCCCGTCACCCTCGTTGCCGCCCTGTTCGGCCTGATCGT
CGGCAGCTTCCTCAACGTGGTGATCCACCGCGTGCCGAAAATGATGCAGCGCGAATCCGATAATTATGTGGCGGAAGAAA
GCGGCTTGCCCTTGCCGCACACGGACCGCTACAACCTGATGCTGCCGCACTCGAACTGCACCGCTTGCGGCCACCGCATC
ACGGCCATGGAAAACATTCCCGTCGTCAGCTACCTGCTGCTGCGCGGCAAATGCAGCGCCTGCCAAGCGCCCATCTCCGT
GCGCTATCCGCTGGTCGAGCTGCTGACGGGCGCGCTGTCGGCCCTCCTGGTCTGGCACTTCGGCAGCGGCTGGACGGGCC
TGGCCACGCTCGTGTTTGCCTGGCTGCTGATCGCCATGACCTTCATCGACGCCGATACGCAAATGCTGCCCGACGACCTC
ACCTTCCCCCTGCTGTGGGCCGGCTTGCTGATCAATATCAACGGTACTTTTGTGCCCCTGCAAGACGCCGTCATCGGCGC
GGCCGCCGGCTACCTGGCCCTGTGGGCCGTGTACTGGGCCTTCAAGCTGGCGACAGGCAAGGAGGGAATGGGCTATGGTG
ACTTCAAATTGCTGGCGGCGCTCGGTGCGTGGCTGGGCTGGACCATGCTGCCGACGATCATCTTATTGTCATCGCTGGTC
GGCGCCGTGGTCGGCATCGGCCTGATCGTCTTCGCCAAGCGGGGGCGCGACAAACCGATTCCGTTCGGCCCCTACCTGGC
GGCGGCAGGCCTGATCGCACTGCTGTACGGCACGCCCCTGTCGCGCCTCACGCTGGGCCTGACCAGCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-127)

• Type IV leader peptidase family (Peptidase_A24) (137-246)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.797	95.502	0.533
pilD	Vibrio campbellii strain DS40M4	56.107	90.657	0.509
pilD	Acinetobacter baumannii D1279779	48.443	100	0.484
pilD	Neisseria gonorrhoeae MS11	53.906	88.581	0.478
pilD	Acinetobacter nosocomialis M2	47.405	100	0.474